View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1905_low_1 (Length: 433)
Name: NF1905_low_1
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 9400081 - 9400486
Alignment:
| Q |
16 |
acaacatccctggcctcttctgcttcccccaacatcattttagaaataacgttgtttgataactttagcaactcttgtgtcacattcacggcctcgtagt |
115 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9400081 |
acaacatccctagcctcctcagcttcccccaacatcattttagaaatgacgttgtttgacaactttagcaactcttgtgtcacattcacagcctcgtagt |
9400180 |
T |
|
| Q |
116 |
ttttcgctttatcagcgaaaagcttaaggaggttgtgagtctcttgtaaacgcaagtgttggaagctactaatgctacgagagcccaaaagctcgttcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9400181 |
ttttcgctttatcagcgaaaagcttaaggaggttgtgagtctcttgtaaacgcaagtgttggaagctactaatgctacgagagcccaaaagctcattcat |
9400280 |
T |
|
| Q |
216 |
actaagttttttaataaatctccaatattcgccatagggcgcaaaagctagagatgcttcataggtgaggcgtttaattgcagttgattcattacgacag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9400281 |
actaagttttttaataaatctccaatattcgccatagggtgcaaaagctagagatgcttcataggtgaggcgtttaattgcagttgattcattacgacaa |
9400380 |
T |
|
| Q |
316 |
ttaaaggcatgttcgttgatttgaaggatttgttttgcgtagtggggagtggatgcaacaacgcagagaacggaaccaaagttaagagaaaatattggtc |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9400381 |
ttaaaggcgtgttcgttgatttgaaggatttgttttgcgtagtgaggagtggatgcaacaacgcagaggacggaaccaaagttaagtgaaaatattggtc |
9400480 |
T |
|
| Q |
416 |
catatt |
421 |
Q |
| |
|
| |||| |
|
|
| T |
9400481 |
cgtatt |
9400486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 9382612 - 9383017
Alignment:
| Q |
16 |
acaacatccctggcctcttctgcttcccccaacatcattttagaaataacgttgtttgataactttagcaactcttgtgtcacattcacggcctcgtagt |
115 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9382612 |
acaacatccctagcctcctcagcttcccccaacatcattttagatatgacgttgtttgataactttagcaactcttgtgtcacattcacagcctcgtagt |
9382711 |
T |
|
| Q |
116 |
ttttcgctttatcagcgaaaagcttaaggaggttgtgagtctcttgtaaacgcaagtgttggaagctactaatgctacgagagcccaaaagctcgttcat |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9382712 |
ttttcgctttatcagcgaaaaacttaaggagattgtgagtctcttgtaaacgcaagtgttggaagctactaatgctacgagagcccaaaagttcgttcat |
9382811 |
T |
|
| Q |
216 |
actaagttttttaataaatctccaatattcgccatagggcgcaaaagctagagatgcttcataggtgaggcgtttaattgcagttgattcattacgacag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382812 |
actaagttttttaataaatctccaatattcgccatagggtgcaaaagctagggatgcttcgtaggtgaggcgtttaattgcagttgattcattacgacaa |
9382911 |
T |
|
| Q |
316 |
ttaaaggcatgttcgttgatttgaaggatttgttttgcgtagtggggagtggatgcaacaacgcagagaacggaaccaaagttaagagaaaatattggtc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9382912 |
ttaaaggcatgttcgttgatttgaaggatttgttttgcgtagtgaggagtggatgcaacaacgcagaggacggaaccaaagttaagtgaaaatattggtc |
9383011 |
T |
|
| Q |
416 |
catatt |
421 |
Q |
| |
|
| |||| |
|
|
| T |
9383012 |
cgtatt |
9383017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 403
Target Start/End: Complemental strand, 23243449 - 23243238
Alignment:
| Q |
192 |
acgagagcccaaaagctcgttcatactaagttttttaataaatctccaatattcgccatagggcgcaaaagctagagatgcttcataggtgaggcgttta |
291 |
Q |
| |
|
||||||||| ||||| || ||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||||| ||||| || || ||||| |
|
|
| T |
23243449 |
acgagagcctaaaagttcattcatgctaagttttttaatgaacctccaataatcaccgtagggcgcgaaagctagagatgaatcataagttagacgtttg |
23243350 |
T |
|
| Q |
292 |
attgcagttgattcattacgacagttaaaggcatgttcgttgatttgaaggatttgttttgcgtagtggggagtggatgcaacaacgcagagaacggaac |
391 |
Q |
| |
|
||||| | | |||| | || | ||||||| ||||||||||||| |||| |||||| ||| |||| || ||||| || | |||||||| ||||||| |
|
|
| T |
23243349 |
attgctgcggtttcaatgcggcgaataaaggcgagttcgttgatttggaggaattgtttggcggagtgaggggtggaagcgatcacgcagaggacggaac |
23243250 |
T |
|
| Q |
392 |
caaagttaagag |
403 |
Q |
| |
|
| | |||||||| |
|
|
| T |
23243249 |
ccatgttaagag |
23243238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University