View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_low_15 (Length: 285)
Name: NF1905_low_15
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 8361721 - 8361966
Alignment:
| Q |
23 |
atgacactcaaaaaatgtatt---aattgttactgcaacgtaacctttaaattatcataaaattcatatcatcatttgtgattgtgacttaccagagtga |
119 |
Q |
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| T |
8361721 |
atgacactcaaaaaatgtattgttatttgttactgcaac-----ctttaaattattataa--ttcatatcatcatttgtgattgtgacttaccagagtga |
8361813 |
T |
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| Q |
120 |
cagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgc |
219 |
Q |
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| T |
8361814 |
cagcgtctctagcagcaagagccaaaatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgc |
8361913 |
T |
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| Q |
220 |
atgcaatgatatgtttggaggtccatccttttctgctttattattctttccctttg |
275 |
Q |
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| T |
8361914 |
atgcaatgatatgtttggaggtccatccttttctgctttat---tctttccctttg |
8361966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 9058591 - 9058670
Alignment:
| Q |
179 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgcttt |
258 |
Q |
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| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtccatccttttctgcttt |
9058670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 31748206 - 31748067
Alignment:
| Q |
119 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
218 |
Q |
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| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
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| Q |
219 |
catgcaatgatatgtttggaggtccatccttttctgcttt |
258 |
Q |
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| T |
31748106 |
catgcaaagatgcatttggtggtccatctttttctgcttt |
31748067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
130 |
agcagcaagagccaagatatcagcacaagacacgac |
165 |
Q |
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| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
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