View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_low_16 (Length: 278)
Name: NF1905_low_16
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 28600597 - 28600351
Alignment:
| Q |
14 |
agaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28600597 |
agaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtag |
28600498 |
T |
|
| Q |
114 |
gctcaacattggcgaaagcaaaagaaaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatg |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28600497 |
gctcaacatcagcgaaagcaaaagaaaagaatgaaatttgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatg |
28600398 |
T |
|
| Q |
214 |
ttggagaaaaccaaatgctaagtgcactatgtgtagtcaaatgagac |
260 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
28600397 |
ttggagaaaacgaaatgctaagtgcactatgtctagtcaaatgagac |
28600351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 8977527 - 8977299
Alignment:
| Q |
14 |
agaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtag |
113 |
Q |
| |
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||||||||||||| ||| || |||||| ||||||| | ||||||||| || |||||||| || ||||||||||||||||||| |||||||| ||| |
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| T |
8977527 |
agaagattgatgaaagaagaaacaacacttgaaggagcattagcagccaagcatcaaaatgtaggtaaattcaagaaggattttgatgaaattgaagtgt |
8977428 |
T |
|
| Q |
114 |
gctcaacattggcgaaagcaaaagaaaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatg |
213 |
Q |
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||||| || || || |||| ||||||||||||||||| ||||||||||||| | || || ||| |||||||||| ||| |||||||| | |||| ||| |
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| T |
8977427 |
actcaaaatcagccaatgcaacagaaaagaatgaaattcaaagaaaatcttatacgccatttcaacattgtggaaaaaaaggtcatccaccctttagatg |
8977328 |
T |
|
| Q |
214 |
ttggagaaaaccaaatgctaagtgcacta |
242 |
Q |
| |
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|||||||| ||| ||||||||||||||| |
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| T |
8977327 |
ttggagaagacctgatgctaagtgcacta |
8977299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 2797492 - 2797349
Alignment:
| Q |
113 |
ggctcaacattggcgaaagcaaaagaaaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaat |
212 |
Q |
| |
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|||||||||| || || |||| ||||||||||| ||||||||||||||||||||| || | ||| | |||||||||||| |||||||| | |||| || |
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| T |
2797492 |
ggctcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccaccctttagat |
2797393 |
T |
|
| Q |
213 |
gttggagaaaaccaaatgctaagtgcactatgtgtagtcaaatg |
256 |
Q |
| |
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||||||||| ||| |||||||||| || | ||||| ||||||| |
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|
| T |
2797392 |
gttggagaagacctgatgctaagtgtaccaagtgtaatcaaatg |
2797349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 6838669 - 6838544
Alignment:
| Q |
131 |
gcaaaagaaaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatgttggagaaaaccaaatg |
230 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| || ||| | |||||||||||| |||||||| | |||| ||||||||||| ||| ||| |
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| T |
6838669 |
gcaacagaaaagaatgcaattcgaagaaaatcttatcctccacgtcaacactgtggaaagaaaggtcatccaccctttagatgttggagaagacctgatg |
6838570 |
T |
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| Q |
231 |
ctaagtgcactatgtgtagtcaaatg |
256 |
Q |
| |
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||||||| || | ||||| ||||||| |
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| T |
6838569 |
ctaagtgtaccaagtgtaatcaaatg |
6838544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 6384938 - 6385083
Alignment:
| Q |
23 |
atgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtaggctcaac-- |
120 |
Q |
| |
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||||||||||| |||||| ||| ||||| |||| |||| || ||||||| || |||||||||||||||||||||||||||| ||| | |||||| |
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| T |
6384938 |
atgagagaggaaacaacatgagaagcagctttagcaaccaagcaaaaaaatgtgggcaaattcaagaaggattttggtgaaattgaagtcgactcaacgt |
6385037 |
T |
|
| Q |
121 |
--attggcgaaagcaaaagaaaagaatgaaattcgaagaaaatctt |
164 |
Q |
| |
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| || || | ||||||||| |||||||||||||||||||||| |
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|
| T |
6385038 |
cagtcagccaatgtaaaagaaaataatgaaattcgaagaaaatctt |
6385083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 2802858 - 2803082
Alignment:
| Q |
15 |
gaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| || |||||| || || |||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
2802858 |
gaagattgatgagagaggacacaacagtcgaacgagttt-agcagcaaagcatcaaaatgtgggaaaattcaaaaaagattttggtgaaattggagtagg |
2802956 |
T |
|
| Q |
115 |
ctcaacattggcgaaagcaaaaga-aaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatg |
213 |
Q |
| |
|
||||||| || || |||||| | |||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||| || |||||| | | |
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| T |
2802957 |
atcaacatcagccaatgcaaaacataaagaatgaaattcgatgaaaatcttatccaccttgtcaacattgtggaaagaaaggtcattcaccatttatagg |
2803056 |
T |
|
| Q |
214 |
ttggagaaaaccaaatgctaagtgca |
239 |
Q |
| |
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||||||| ||| |||||||||||| |
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| T |
2803057 |
gtggagaagacctgatgctaagtgca |
2803082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 13812324 - 13812483
Alignment:
| Q |
14 |
agaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtag |
113 |
Q |
| |
|
|||||| | ||||||||||||||| || | ||||| | | ||| ||||| || || ||| | || ||||||||||| | |||||||||||||||||||| |
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| T |
13812324 |
agaagactaatgagagaggacacaccagctgaaggaaccttagcggccaagcaacataatttgggcaaattcaagaatggttttggtgaaattggagtag |
13812423 |
T |
|
| Q |
114 |
gctcaacattggcgaaagcaaaagaaaagaatgaaattcgaagaaaatcttatccacctt |
173 |
Q |
| |
|
|||||||| | || || |||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
13812424 |
gctcaacactagccaatgcaaaagaaaagaatgaaattcaaaaaaaatcttatccgcctt |
13812483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 20083313 - 20083168
Alignment:
| Q |
14 |
agaagattgatgagagaggacacaacaacgaaaggagcttcagcagccaatcagcaaaatgttggaaaattcaagaaggattttggtgaaattggagtag |
113 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||| | |||| |||| |||| |||||| ||||||||||||||||||||||||| |||| |||| | |
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| T |
20083313 |
agaagattaatgagagaggaaacaacatttgaaggagcattagcatccaagcagccaaatgtgggaaaattcaagaaggattttggtgtaattagagtgg |
20083214 |
T |
|
| Q |
114 |
gctcaacattggcgaaagcaaaagaaaagaatgaaattcgaagaaa |
159 |
Q |
| |
|
| || |||| || | ||| |||||||||||||||||||||||| |
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|
| T |
20083213 |
gatcgacatcagccactacaagagaaaagaatgaaattcgaagaaa |
20083168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 32525910 - 32526035
Alignment:
| Q |
131 |
gcaaaagaaaagaatgaaattcgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatccatcatttaaatgttggagaaaaccaaatg |
230 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| || | ||| | | |||||||||| |||||||| | || | ||||||||||| ||| ||| |
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|
| T |
32525910 |
gcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactatggaaagaaaggtcatccacccttaagatgttggagaagacctgatg |
32526009 |
T |
|
| Q |
231 |
ctaagtgcactatgtgtagtcaaatg |
256 |
Q |
| |
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||||||| || | ||||| ||||||| |
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|
| T |
32526010 |
ctaagtgtaccaagtgtaatcaaatg |
32526035 |
T |
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Back To:
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