View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_low_17 (Length: 277)
Name: NF1905_low_17
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 13706430 - 13706174
Alignment:
| Q |
5 |
ttttcatctcaatttcatccttttgattcttcaaatatgacatttatgtcgataattaatttatttcgcgagggatcaagaaccttgtaacctttatatt |
104 |
Q |
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||||||||||||||||||| |||| |||||||||| ||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
13706430 |
ttttcatctcaatttcatcattttaattcttcaaaaatgacatctatgtcgattattactttattttgcgagcgatcaagaaccttgtaacctttatatt |
13706331 |
T |
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| Q |
105 |
aatttataatcccaaaatgaacacatttgacaacttttgcatcaagcttctttctattatcataaggtacatatgcatctgctattcaaccaaagactct |
204 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13706330 |
aatttataatcccaaaatgaacacatttgacaccttttgcatcaagcttctttctattatcatgaggtacatatgcatctgctattcaaccaaagactct |
13706231 |
T |
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| Q |
205 |
aaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtatgttt |
261 |
Q |
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| T |
13706230 |
aaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtatgttt |
13706174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 13713921 - 13713665
Alignment:
| Q |
5 |
ttttcatctcaatttcatccttttgattcttcaaatatgacatttatgtcgataattaatttatttcgcgagggatcaagaaccttgtaacctttatatt |
104 |
Q |
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||||||||||||||||||| |||| |||||||||| ||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
13713921 |
ttttcatctcaatttcatcattttaattcttcaaaaatgacatctatgtcgattattactttattttgcgagcgatcaagaaccttgtaacctttatatt |
13713822 |
T |
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| Q |
105 |
aatttataatcccaaaatgaacacatttgacaacttttgcatcaagcttctttctattatcataaggtacatatgcatctgctattcaaccaaagactct |
204 |
Q |
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| T |
13713821 |
aatttataatcccaaaatgaacacatttgacaccttttgcatcaagcttctttctattatcatgaggtacatatgcatctgctattcaaccaaagactct |
13713722 |
T |
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| Q |
205 |
aaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtatgttt |
261 |
Q |
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| T |
13713721 |
aaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtatgttt |
13713665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 13700342 - 13700242
Alignment:
| Q |
157 |
tctattatcataaggtacatatgcatctgctattcaaccaaagactctaaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgta |
256 |
Q |
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| T |
13700342 |
tctattatcataatgtacatatgcatctgctattcaacctaagactctaaactaatagacaataaacttcaaatcactccaactttcctcagatgtcgta |
13700243 |
T |
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| Q |
257 |
t |
257 |
Q |
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| T |
13700242 |
t |
13700242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 24657782 - 24657830
Alignment:
| Q |
111 |
taatcccaaaatgaacacatttgacaacttttgcatcaagcttctttct |
159 |
Q |
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| T |
24657782 |
taatcccaagatgaacacaattgataccttttggatcaagcttctttct |
24657830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 17390472 - 17390324
Alignment:
| Q |
5 |
ttttcatctcaatttcatccttttgattcttcaaatatgacatttatgtcgataattaatttatttcgcgagggatcaagaaccttgtaacctttatatt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||| ||||||| | ||||||||||||||||||||||||||||||| |
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| T |
17390472 |
ttttcatctcaatttcatccttttgattcttcaaatatgccatctagatcgattattactttattttgtgagggatcaagaaccttgtaacctttatatt |
17390373 |
T |
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| Q |
105 |
aatttataatcccaaaatgaacacatttgacaacttttgcatcaagctt |
153 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
17390372 |
aatttatattcccaaaatgaacacatttgacaccttttgcatcaagctt |
17390324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 17390292 - 17390230
Alignment:
| Q |
195 |
caaagactctaaattaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtat |
257 |
Q |
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| T |
17390292 |
caaagactctaaactaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtat |
17390230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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