View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_low_28 (Length: 212)
Name: NF1905_low_28
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 8259989 - 8259818
Alignment:
| Q |
21 |
tctatgattttgtctatgaaactatccaaatctttacgagccttcacaagcctagcattaagcccttgaggatcaatagctccaaagcaaggtacaaaat |
120 |
Q |
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| T |
8259989 |
tctatgattttgtctatgaaactatccaattctttacgagccttcacaagcctagcattaagcccttgaggatcaatagctccaaagcaaggtacaaaat |
8259890 |
T |
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| Q |
121 |
cagaaatattaaaagctccaaacaatttggaaaactcttgcaatattccaataaactcatcttgttcttctc |
192 |
Q |
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| T |
8259889 |
cagaaatattaaaagctccaaacaatttggaaaactcttgcaatattccaataaactcatcttgtccttctc |
8259818 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 32315798 - 32315933
Alignment:
| Q |
56 |
acgagccttcacaagcctagcattaagcccttgaggatcaatag-ctccaaagcaaggtacaaaatcagaaatattaaaagctccaaacaatttggaaaa |
154 |
Q |
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||||||||| ||||||||| |||||| ||||||||||||| || |||| ||||| |||||||| | |||||||||||| ||||||||||| ||||| |
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| T |
32315798 |
acgagccttaacaagcctatcattaaaaccttgaggatcaacccacttcaaa-caaggaacaaaatccgcaatattaaaagcaccaaacaatttcgaaaa |
32315896 |
T |
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| Q |
155 |
ctcttgcaatattccaataaactcatcttgttcttct |
191 |
Q |
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| T |
32315897 |
ctcttgaagtatcgaaatgaactcatcttgtccttct |
32315933 |
T |
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