View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_low_7 (Length: 348)
Name: NF1905_low_7
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 11178757 - 11179081
Alignment:
| Q |
6 |
gaggagaagcaaaggcagacaattcctcaatctcaactgatatgctttccaaagcttgttgcacttatcatcaagagttgccacggtttgaaaagtctca |
105 |
Q |
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| T |
11178757 |
gaggaaaatcaaaggcagacaattcctcaatctcaactgatatgctttccgaagctcgttgcacttatcatcaagagttgccacggtttgaaaagtctca |
11178856 |
T |
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| Q |
106 |
tctctgtcaacacattccaagagtttccaaagttagagctcatgatcataaaagaagcctctcggttagatgacatgtttataagtgaaccacatgatga |
205 |
Q |
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| T |
11178857 |
tctctgtcaacacattccaagagtttccaaagttagagctcatgatcataaaagaagcctctcagttagatgacatgtttataagtgaaccacatgatga |
11178956 |
T |
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| Q |
206 |
gattcctaagcagaaacttcggcttcctaatctcaaatatctggtgcttatgcaactgccaaacctcactgatccgagccaacatatggagttgcagaat |
305 |
Q |
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| T |
11178957 |
gattcctaagcagaaacttcggcttcctaatctcaaatatctggtgcttatgcaactgccaaacctcactgatccgagccaacatatggagttgcagaat |
11179056 |
T |
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| Q |
306 |
gtgacttacagcattgtggatcatt |
330 |
Q |
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| T |
11179057 |
gtgacttacagcattgtggatcatt |
11179081 |
T |
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