View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_high_10 (Length: 456)
Name: NF19060_high_10
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 30709689 - 30709228
Alignment:
| Q |
1 |
tactaagaaagatgaacctcaacacaaagtaaaatatttccgaataattagtgtcatggaacagatacctgaaataccaaaggaacctcaacacaatgaa |
100 |
Q |
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| T |
30709689 |
tactaagaaagatgaacctcaacacaaagtaaaatatttccgaataattagtgtcatggaacagatacctgaaataccaaaggaacctcaacacaatgaa |
30709590 |
T |
|
| Q |
101 |
cctgaac-gatacttgtaaatgtccaggtgactgaggtggcaaat-----------------gtgattgaaggtgcatcaacgccacaacggagaacagt |
182 |
Q |
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| T |
30709589 |
cctgaaccgatacttgaaaatgtccgggtgactgaggtggcaaattgactgaggtggcaaatgtgattgaaggtgcagcaacgccacaaccgagaacagt |
30709490 |
T |
|
| Q |
183 |
ccagcacctccttccattttccattggagaatgttatagatattgtggagca--atccgattgatactttgggaacgattcaacaga--gaggaaaatac |
278 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
30709489 |
ccggaacctccttccattttccattggagaatgttatagatattgtggagcacaatccgattgatactttgggaacgattcaacacatagaggaaaatac |
30709390 |
T |
|
| Q |
279 |
tcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctattgacgcttcttctctgagggagactgttcctgaa |
378 |
Q |
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| T |
30709389 |
tcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctactgccacttcttctccgagggagactgttcttgaa |
30709290 |
T |
|
| Q |
379 |
acaca--gcaagtggagcaacctaatatatgcccagttctacaaaaggatcttaattgattc |
438 |
Q |
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| T |
30709289 |
acacagggcaagtggagcaacctaatatatgcccagttctacaaaaggatcttaattgattc |
30709228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 128 - 431
Target Start/End: Original strand, 13231488 - 13231791
Alignment:
| Q |
128 |
tgactgaggtggcaaatgtgattgaaggtgcatcaacgccacaacggaga--acagtccagcacctccttccattttccattggagaatgttatagatat |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| |||||||||||||||||| |||||||||||| |||||||| |
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| T |
13231488 |
tgactgaggtggcaaatgtgattgaaggtgcataaacgctgcaaccgagaggacagtttggcacctccttccattttcgattggagaatgtaatagatat |
13231587 |
T |
|
| Q |
226 |
tgtgga--gcaatccgattgatactttgggaacgattcaacagagaggaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgt |
323 |
Q |
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| T |
13231588 |
tgtggagcgcaatcagattgatactttgggaatggttcaac-----gcataatactcatattttagagccgattaagccgttgaagacatcagctgttgc |
13231682 |
T |
|
| Q |
324 |
gacatcttctagtgtgtctattgacgcttcttctctgagggagactgttcctgaaacacagcaagtggagcaacctaatata-tgcccagttctacaaaa |
422 |
Q |
| |
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| T |
13231683 |
gacatctattggtgtgtctactgccacttcttctaggagggagatggttcttgaaacacaaaaggtgtagcaacctagtatactgtctagttctacaaaa |
13231782 |
T |
|
| Q |
423 |
ggatcttaa |
431 |
Q |
| |
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||||||||| |
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| T |
13231783 |
ggatcttaa |
13231791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 23850934 - 23850844
Alignment:
| Q |
86 |
cctcaacacaatgaacctgaac-gatacttgtaaatgtccaggtgactgaggtggcaaatgtgattgaaggtgcatcaacgccacaacggaga |
177 |
Q |
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|||||||||||||||| ||| | |||| ||| ||||||||||||||| |||| || ||||| |||||||||||||| || ||| |||| |||| |
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| T |
23850934 |
cctcaacacaatgaacgtgagccgata-ttgaaaatgtccaggtgac-gaggcggaaaatgcgattgaaggtgcattaatgccgcaacagaga |
23850844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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