View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_high_12 (Length: 445)

Name: NF19060_high_12
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_high_12
NF19060_high_12
[»] chr7 (7 HSPs)
chr7 (7-426)||(927665-928094)
chr7 (176-223)||(31808540-31808586)
chr7 (186-224)||(17930454-17930492)
chr7 (184-225)||(27945030-27945071)
chr7 (184-221)||(30177037-30177074)
chr7 (184-221)||(30516390-30516427)
chr7 (184-225)||(43249982-43250023)
[»] chr6 (8 HSPs)
chr6 (176-225)||(15443676-15443725)
chr6 (192-225)||(4859142-4859175)
chr6 (184-221)||(7250996-7251033)
chr6 (184-225)||(10760870-10760911)
chr6 (187-225)||(9024205-9024243)
chr6 (188-221)||(17422288-17422321)
chr6 (184-224)||(32313393-32313433)
chr6 (184-224)||(33303648-33303688)
[»] chr2 (1 HSPs)
chr2 (184-224)||(12464879-12464919)
[»] chr5 (8 HSPs)
chr5 (189-224)||(39424635-39424670)
chr5 (184-221)||(9878065-9878102)
chr5 (187-225)||(28296320-28296358)
chr5 (187-224)||(2039879-2039916)
chr5 (184-225)||(9449458-9449499)
chr5 (188-225)||(11596484-11596521)
chr5 (188-225)||(23287378-23287415)
chr5 (184-225)||(41558712-41558753)
[»] chr1 (7 HSPs)
chr1 (187-226)||(39828263-39828302)
chr1 (182-225)||(3921654-3921697)
chr1 (184-225)||(609487-609528)
chr1 (184-225)||(2445859-2445900)
chr1 (184-225)||(10572618-10572659)
chr1 (176-225)||(34298417-34298466)
chr1 (173-225)||(2896150-2896202)
[»] chr3 (6 HSPs)
chr3 (187-225)||(41319339-41319377)
chr3 (187-225)||(25074781-25074819)
chr3 (187-225)||(46191374-46191412)
chr3 (184-225)||(24205070-24205111)
chr3 (184-225)||(26290360-26290401)
chr3 (184-221)||(52067085-52067122)
[»] chr8 (5 HSPs)
chr8 (184-225)||(14227211-14227252)
chr8 (184-220)||(11815818-11815854)
chr8 (194-225)||(40063950-40063981)
chr8 (188-225)||(2648277-2648314)
chr8 (184-225)||(44067505-44067546)
[»] chr4 (6 HSPs)
chr4 (173-225)||(34515903-34515955)
chr4 (186-224)||(4307051-4307089)
chr4 (187-225)||(7012058-7012096)
chr4 (179-225)||(20743307-20743353)
chr4 (187-221)||(47040264-47040298)
chr4 (188-225)||(54621805-54621842)
[»] scaffold0085 (1 HSPs)
scaffold0085 (186-225)||(26384-26423)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-225)||(225297-225338)


Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 928094 - 927665
Alignment:
Q  7 gtgagatgaagcaccaaacattctatatggctaaaaggacattaggcacaccaaacaatgtctagacctaaaacatttcctcaaaaaattatgattactt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  928094 gtgagaagaagcaccaaacattctatatggctaaaaggacattaggcacaccaaacaatgtctagacctaaaacatttcctcaaaaaattatgattactt 927995  T
Q  107 ccaatggtagaagttg----------gacaagttgaaacctatgaagcatgaacacatataaggacaagacattggacaacacgaaaactgacacgtcga 196  Q
    ||||||||||||||||          ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  927994 ccaatggtagaagttgcatgcaaaaggacaagttgaaacctatgaagcacgaacacatataaggacaagacactggacaacacgaaaactgacacgtcga 927895  T
Q  197 caccaataataatttgagaaaatgacatacataaaatattgtatattgcaaggactaaaagatttaattgttaatatgataatattacatatttggtgac 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927894 cactaataataatttgagaaaatgacatacataaaatattgtatattgcaaggactaaaagatttaattgttaatatgataatattacatatttggtgac 927795  T
Q  297 aaaatatgatattatgacatagtaaaatgatatgatgaaggtactaaagtaagtcacacaatacaagcattgcgtttcaatgtcatttcccattgataaa 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927794 aaaatatgatattatgacatagtaaaatgatataatgaaggtactaaagtaagtcacacaatacaagcattgcgtttcaatgtcatttcccattgataaa 927695  T
Q  397 gcaacatagtgagtggtgaggagtcggttt 426  Q
    ||||||||||||||||||||||||||||||    
T  927694 gcaacatagtgagtggtgaggagtcggttt 927665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 31808586 - 31808540
Alignment:
Q  176 acacgaaaactgacacgtcgacaccaataataatttgagaaaatgaca 223  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  31808586 acacgaacactgacacgtcg-caccgataataatttgagaaaatgaca 31808540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 17930454 - 17930492
Alignment:
Q  186 tgacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  17930454 tgacacgtcgacaccaatactaatttaagaaaatgacat 17930492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 27945030 - 27945071
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  27945030 actgacacgccgacaccactaataatttgagaaaattacata 27945071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 30177074 - 30177037
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatga 221  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  30177074 actgacacgtcaacaccagtaataatttgagaaaatga 30177037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 30516427 - 30516390
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatga 221  Q
    |||||||||||||||| || ||||||||||||||||||    
T  30516427 actgacacgtcgacactaacaataatttgagaaaatga 30516390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 43249982 - 43250023
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  43249982 actgacacgccgacacggataataatttgagaaaatgacata 43250023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 15443676 - 15443725
Alignment:
Q  176 acacgaaaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  15443676 acacgaacactgacacgtcgacatcaataataatttgagaaaataacata 15443725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 4859175 - 4859142
Alignment:
Q  192 gtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||||||||||||||||||||||||    
T  4859175 gtcgacaccaataataatttgagaaaatgacata 4859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 7251033 - 7250996
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatga 221  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7251033 actgacacgttgacaccaataataatttgagaaaatga 7250996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 10760911 - 10760870
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  10760911 actgacacgtcgacactgataataatttgagaaaatgacata 10760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 9024243 - 9024205
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  9024243 gacacgtcgacacaaatgataatttgagaaaatgacata 9024205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 17422321 - 17422288
Alignment:
Q  188 acacgtcgacaccaataataatttgagaaaatga 221  Q
    ||||||||||||| ||||||||||||||||||||    
T  17422321 acacgtcgacaccgataataatttgagaaaatga 17422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 32313393 - 32313433
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    ||||||||| ||||||||||||||| |||||||||| ||||    
T  32313393 actgacacgccgacaccaataataagttgagaaaataacat 32313433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 33303648 - 33303688
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    |||||||| ||||||| ||||||||||||| ||||||||||    
T  33303648 actgacacatcgacactaataataatttgaaaaaatgacat 33303688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 12464919 - 12464879
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  12464919 actgacacgccgacaccaataataatttgagaaaatgacat 12464879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 39424635 - 39424670
Alignment:
Q  189 cacgtcgacaccaataataatttgagaaaatgacat 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  39424635 cacgtcgacaccaataataatttgagaaaatgacat 39424670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 9878102 - 9878065
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatga 221  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9878102 actgacacgtcgacaccaataataatttgagaatatga 9878065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 28296320 - 28296358
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  28296320 gacaagtcgacaccgataataatttgagaaaatgacata 28296358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 2039916 - 2039879
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  2039916 gacacgtcgacaccggtaataatttgagaaaatgacat 2039879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 9449458 - 9449499
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||| |||| |||||||||||||||||||||||||| |||||    
T  9449458 actggcacgccgacaccaataataatttgagaaaatcacata 9449499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 11596521 - 11596484
Alignment:
Q  188 acacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacata 11596484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 23287415 - 23287378
Alignment:
Q  188 acacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  23287415 acacgtcgacaccaataataatttaggaaaatgacata 23287378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 41558753 - 41558712
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||||| | ||||| |||||||||||||||||||||||||    
T  41558753 actgacacattgacacaaataataatttgagaaaatgacata 41558712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 39828263 - 39828302
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacatac 226  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  39828263 gacacgtcgacaccaataataatttgagaaaataacatac 39828302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3921654 - 3921697
Alignment:
Q  182 aaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||    
T  3921654 aaacggacacgtcaacatcaataataatttgagaaaatgacata 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 609528 - 609487
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  609528 actgacacgccgacaccactaataatttgagaaaattacata 609487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 2445859 - 2445900
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||||| || |||||||| |||||||||||||||||||||    
T  2445859 actgacacttcaacaccaatgataatttgagaaaatgacata 2445900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 10572659 - 10572618
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  10572659 actgacacgccgacaccactaataatttgagaaaatcacata 10572618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 34298417 - 34298466
Alignment:
Q  176 acacgaaaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||| ||||||||||  |||||||| ||||||||||||||||| |||||    
T  34298417 acacggaaactgacacaccgacaccactaataatttgagaaaatcacata 34298466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 2896202 - 2896150
Alignment:
Q  173 acaacacgaaaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||||| | ||||||||| |||||||  ||||||||||||||||| |||||    
T  2896202 acaacacggacactgacacgccgacaccgctaataatttgagaaaatcacata 2896150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 41319377 - 41319339
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  41319377 gacacgtcgacaccaataataatttgaaaaaatgacata 41319339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 25074781 - 25074819
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacata 25074819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 46191412 - 46191374
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  46191412 gacacatcgacaccaataataatttgagaaaatcacata 46191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 24205111 - 24205070
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  24205111 actgacacgccgacacggataataatttgagaaaatgacata 24205070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 26290360 - 26290401
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| |||||||| ||||||||||||||||| |||||    
T  26290360 actgacacgccgacaccattaataatttgagaaaatcacata 26290401  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 52067085 - 52067122
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatga 221  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  52067085 actgacacgtcgataccaataataatttaagaaaatga 52067122  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 14227211 - 14227252
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  14227211 actgacacgtcaacaccaataataatttgagaaaataacata 14227252  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 11815818 - 11815854
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatg 220  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11815818 actgacacgttgacaccaataataatttgagaaaatg 11815854  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 225
Target Start/End: Original strand, 40063950 - 40063981
Alignment:
Q  194 cgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||||||||||||||||||||||||||    
T  40063950 cgacaccaataataatttgagaaaatgacata 40063981  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 2648314 - 2648277
Alignment:
Q  188 acacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  2648314 acacgtcaacaccaataataatttgagaaaataacata 2648277  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 44067505 - 44067546
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  44067505 actgacacgccgacacggataataatttgagaaaatgacata 44067546  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 34515955 - 34515903
Alignment:
Q  173 acaacacgaaaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||||||| ||||||||||||||||  |||||||||  |||||||||||||    
T  34515955 acaacacgaacactgacacgtcgacacggataataattcaagaaaatgacata 34515903  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 4307051 - 4307089
Alignment:
Q  186 tgacacgtcgacaccaataataatttgagaaaatgacat 224  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  4307051 tgacacgtcggcaccaataataatttgagaaaattacat 4307089  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 7012058 - 7012096
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  7012058 gacacgccgacaccgataataatttgagaaaatgacata 7012096  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 20743353 - 20743307
Alignment:
Q  179 cgaaaactgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  20743353 cgaacactgacacgccgacacggataataatttgagaaaatgacata 20743307  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 47040298 - 47040264
Alignment:
Q  187 gacacgtcgacaccaataataatttgagaaaatga 221  Q
    ||||||||||||||||| |||||||||||||||||    
T  47040298 gacacgtcgacaccaatgataatttgagaaaatga 47040264  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 54621805 - 54621842
Alignment:
Q  188 acacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  54621805 acacatcgacaccaataatagtttgagaaaatgacata 54621842  T

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Target: scaffold0085 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 26384 - 26423
Alignment:
Q  186 tgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  26384 tgacacgtcgacaccactaataatttgagaaaatcacata 26423  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 225338 - 225297
Alignment:
Q  184 actgacacgtcgacaccaataataatttgagaaaatgacata 225  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  225338 actgacacgccgacacagataataatttgagaaaatgacata 225297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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