View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_high_15 (Length: 382)
Name: NF19060_high_15
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 3438560 - 3438919
Alignment:
| Q |
18 |
ggaagtattgatgggaagtaaaaatggattcttgactaaaaggttgagaaattattctacagatcgcaacaacccttgtaaaccaactgcactttctggt |
117 |
Q |
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| T |
3438560 |
ggaagtattgatgggaagtaaaaatggattcttgactaaaaggttgagaaattattctacagatcgcaacaacccttgtaaaccaactgcactttctggt |
3438659 |
T |
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| Q |
118 |
ttatctccctatttgcattttggacagatatctgctcaaagatgtgctttagaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgc |
217 |
Q |
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| T |
3438660 |
ttatctccctatttgcattttggacagatatctgctcaaagatgtgctttagaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgc |
3438759 |
T |
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| Q |
218 |
tgtttatgttgcttcattttgtttttcctaaaaaagtggtgattaaagatcttttcttagacttaactttttctgttcttcaatgttggtgtaaaggctg |
317 |
Q |
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| T |
3438760 |
tgtttatgttgcttcattttgtttttcctaaaaaagtggtgattaaagatcttttcttagacttaactttttctgttcttcaatgttggtgtaaaggctg |
3438859 |
T |
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| Q |
318 |
ttgacactttcttggaggagttgattgtgcggagagaacttgctgataacctatgctact |
377 |
Q |
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| T |
3438860 |
ttgacactttcttggaggagttgattgtgcggagagaacttgctgataacttttgctact |
3438919 |
T |
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