View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_high_29 (Length: 250)
Name: NF19060_high_29
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_29 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 32628065 - 32627824
Alignment:
| Q |
9 |
gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628065 |
gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat |
32627966 |
T |
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| Q |
109 |
cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32627965 |
cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttc |
32627866 |
T |
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| Q |
209 |
aacaccatatttaagtcccttgacattttcaaagaaaaacta |
250 |
Q |
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| T |
32627865 |
aacaccatatttacgtcccttgacattttcaaagaaaaacta |
32627824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 32704293 - 32704052
Alignment:
| Q |
9 |
gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat |
108 |
Q |
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|||| ||||||||||| | ||||||||| || |||||| ||| ||||||| |||||||||| || |||||||||| |||| ||||||||||||||| ||| |
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| T |
32704293 |
gagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgat |
32704194 |
T |
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| Q |
109 |
cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatat----gatatttttgaacgatctaccgggaaatga |
204 |
Q |
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|| ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||| |||||||| | | ||||||||||||||||| || || || |
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| T |
32704193 |
ctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacga |
32704094 |
T |
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| Q |
205 |
cttcaacaccatatttaagtcccttgacattttcaaagaaaa |
246 |
Q |
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| T |
32704093 |
cttcaacaatgtatttaggtccctcgacacgttcaaagaaaa |
32704052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 7298224 - 7298000
Alignment:
| Q |
9 |
gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat |
108 |
Q |
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|||||||||||||||| ||| | ||| ||| ||||| | ||||||| | |||||||||| |||||||| ||||||||| ||||||||||||| ||| | |
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| T |
7298224 |
gagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggt |
7298125 |
T |
|
| Q |
109 |
cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttc |
208 |
Q |
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| ||||||||||| |||||||| |||||||| | | || | || ||| ||||||||| || | ||||||||| || ||| | | |||||||||||| |
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| T |
7298124 |
atcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgacttc |
7298025 |
T |
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| Q |
209 |
aacaccatatttaagtcccttgaca |
233 |
Q |
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|||| |||||||||||| ||||||| |
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| T |
7298024 |
aacaacatatttaagtcacttgaca |
7298000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
60 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
159 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
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| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
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| Q |
160 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
210 |
Q |
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|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
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| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 5811667 - 5811469
Alignment:
| Q |
52 |
aagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaactt |
151 |
Q |
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||||||| ||||||||||||| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| ||||| |
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| T |
5811667 |
aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt |
5811568 |
T |
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| Q |
152 |
aatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaacta |
250 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| ||||||||||||||| |
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| T |
5811567 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaacta |
5811469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 27737001 - 27736788
Alignment:
| Q |
37 |
caacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaag |
136 |
Q |
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||||||||| ||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| |
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| T |
27737001 |
caacacacttcccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaa |
27736902 |
T |
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| Q |
137 |
ctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattt |
236 |
Q |
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||||||| | | | ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| | |
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| T |
27736901 |
ctttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacacct |
27736802 |
T |
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| Q |
237 |
tcaaagaaaaacta |
250 |
Q |
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||||||| |||||| |
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| T |
27736801 |
tcaaagagaaacta |
27736788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 246
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
63 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
162 |
Q |
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|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
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| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
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| Q |
163 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
246 |
Q |
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||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
63 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
162 |
Q |
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|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
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| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
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| Q |
163 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
249 |
Q |
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||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
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| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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