View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_high_3 (Length: 872)

Name: NF19060_high_3
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_high_3
NF19060_high_3
[»] chr5 (7 HSPs)
chr5 (1-782)||(1001213-1001994)
chr5 (171-306)||(1002674-1002809)
chr5 (457-514)||(1002930-1002987)
chr5 (83-119)||(2713077-2713113)
chr5 (83-127)||(3775180-3775224)
chr5 (83-127)||(14749432-14749476)
chr5 (83-127)||(15489605-15489649)
[»] chr4 (7 HSPs)
chr4 (83-127)||(49987533-49987577)
chr4 (83-130)||(37488213-37488260)
chr4 (83-119)||(8599054-8599090)
chr4 (83-127)||(38903831-38903874)
chr4 (83-117)||(10209171-10209205)
chr4 (84-117)||(35555761-35555794)
chr4 (78-119)||(35690404-35690445)
[»] chr1 (8 HSPs)
chr1 (87-127)||(40228123-40228163)
chr1 (83-127)||(38869007-38869051)
chr1 (83-119)||(50771669-50771705)
chr1 (84-119)||(51584877-51584912)
chr1 (86-119)||(8203250-8203283)
chr1 (86-119)||(19969328-19969361)
chr1 (83-124)||(40416499-40416540)
chr1 (82-127)||(52073164-52073209)
[»] chr8 (8 HSPs)
chr8 (83-124)||(4011211-4011252)
chr8 (83-127)||(35643719-35643763)
chr8 (87-127)||(45512612-45512652)
chr8 (86-119)||(5908779-5908812)
chr8 (86-123)||(9904998-9905035)
chr8 (82-119)||(16994556-16994593)
chr8 (86-119)||(38178376-38178409)
chr8 (1-37)||(45419450-45419487)
[»] chr7 (9 HSPs)
chr7 (86-127)||(38135329-38135370)
chr7 (83-119)||(12966149-12966185)
chr7 (83-119)||(14593893-14593929)
chr7 (83-119)||(16013416-16013452)
chr7 (83-127)||(30814784-30814828)
chr7 (86-120)||(21517496-21517530)
chr7 (1-37)||(25891103-25891140)
chr7 (90-119)||(37976368-37976397)
chr7 (83-124)||(40830330-40830371)
[»] chr6 (3 HSPs)
chr6 (83-127)||(34618-34662)
chr6 (83-123)||(8364685-8364725)
chr6 (1-37)||(18130844-18130881)
[»] chr3 (5 HSPs)
chr3 (83-119)||(11581577-11581613)
chr3 (83-127)||(31261055-31261099)
chr3 (83-119)||(39600794-39600830)
chr3 (87-127)||(54365092-54365132)
chr3 (1-37)||(24778639-24778676)
[»] chr2 (3 HSPs)
chr2 (83-127)||(26784453-26784497)
chr2 (83-119)||(33287554-33287590)
chr2 (1-37)||(3720445-3720482)
[»] scaffold0018 (1 HSPs)
scaffold0018 (83-118)||(178533-178568)


Alignment Details
Target: chr5 (Bit Score: 766; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 1 - 782
Target Start/End: Original strand, 1001213 - 1001994
Alignment:
Q  1 tggggtcggctacatggatcaaattaaccataatgttaacggaggccgctatagatattacaaacttttgttcttttaattattcttaatagtttcactt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001213 tggggtcggctacatggatcaaattaaccataaggttaacggaggccgctatagatattacaaacttttgttcttttaattattcttaatagtttcactt 1001312  T
Q  101 atagtttttctaggtcttcatctgcctatgcgcacgaaaactcaataaaataagggggaagcaagttaattgtgaaatgtagcttacttgatggtggcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001313 atagtttttctaggtcttcatctgcctatgcgcacgaaaactcaataaaataagggggaagcaagttaattgtgaaatgtagcttacttgatggtggcac 1001412  T
Q  201 caatgaaatgtttgattgcttcaccagctacgaccctgttgaccaaagtcaagtgcatggaaatggatatttcaatatcaatttaaataagtaaattaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001413 caatgaaatgtttgattgcttcaccagctacgaccctgttgaccaaagtcaagtgcatggaaatggatatttcaatatcaatttaaataagtaaattaaa 1001512  T
Q  301 agtaatgactaaaatggaaccaaccaaacagagagaatcggagaaaaagagaaaaaatacaactttggacagaaattgaacctcatagaaggaaaaccga 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001513 agtaatgactaaaatggaaccaaccaaacagagagaatcggaaaaaaagagaaaaaatacaactttggacagaaattgaacctcatagaaggaaaaccga 1001612  T
Q  401 atggtctgagcagtgtaaccctaaaccttcgacagaatcttgtttctgcactgcggcgaaagaagaaattattactgagtgaagttaattaatggactat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1001613 atggtctgagcagtgtaaccctaaaccttcgacagaatcttgtttctgcactgcggcgaaagaagaaattattaccgagtgaagttaattaatggactat 1001712  T
Q  501 taatggaccaattagcttgcatggtggtaatgtactcggccgagttagactttgcaaggcccaaatttggtgtgttcaaaaagtttgaggccgaagtctc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001713 taatggaccaattagcttgcatggtggtaatgtactcggccgagttagactttgcaaggcccaaatttggtgtgttcaaaaagtttgaggccgaagtctc 1001812  T
Q  601 aactattaactcgtttttgggcctgagtatgacatttttaaatataaatatgtttcgttttgttgttcaactctgccatatggcagtcacccattgaatg 700  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001813 aactattaactcgcttttgggcctgagtatgacatttttaaatataaatatgtttcgttttgttgttcaactctgccatatggcagtcacccattgaatg 1001912  T
Q  701 ttgacgtgtcaatccagcatcacatgacaccaaatatgacatgacatgaaatttggatgagaacatggcacccgagagcaaa 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001913 ttgacgtgtcaatccagcatcacatgacaccaaatatgacatgacatgaaatttggatgagaacatggcacccgagagcaaa 1001994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 171 - 306
Target Start/End: Original strand, 1002674 - 1002809
Alignment:
Q  171 tgtgaaatgtagcttacttgatggtggcaccaatgaaatgtttgattgcttcaccagctacgaccctgttgaccaaagtcaagtgcatggaaatggatat 270  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||| |  |||||||||||||||| ||    
T  1002674 tgtgaaatgtagcttacttgatggtggcgccaatgaaattgttgattgcttcaccagtaacaaccctgttgacaaaattggagtgcatggaaatggagat 1002773  T
Q  271 ttcaatatcaatttaaataagtaaattaaaagtaat 306  Q
    ||| |||| || ||||||||  ||||||||||||||    
T  1002774 ttcgatatgaaattaaataaaaaaattaaaagtaat 1002809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 1002930 - 1002987
Alignment:
Q  457 cgaaagaagaaattattactgagtgaagttaattaatggactattaatggaccaatta 514  Q
    |||||||||||||||||    | |||||||||||||||||| ||||||||||||||||    
T  1002930 cgaaagaagaaattattggctaatgaagttaattaatggaccattaatggaccaatta 1002987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 2713113 - 2713077
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2713113 ttcttaatagtttctcttatagtttttctaggtcttc 2713077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 3775180 - 3775224
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||  |||||||||||||||||||||| |||||||    
T  3775180 ttcttaatagtttatcttatagtttttctaggtcttcttctgcct 3775224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 14749476 - 14749432
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||| |||||||| |||||||||||||||||||||| |||||||    
T  14749476 ttcttgatagtttctcttatagtttttctaggtcttcctctgcct 14749432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 15489605 - 15489649
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||    
T  15489605 ttcttaatagtttctcttattgtttttctaggtcttcctctgcct 15489649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 49987577 - 49987533
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  49987577 ttcttaatagtttctcttatagtttttctaggtcttcctctgcct 49987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 37488260 - 37488213
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcctatg 130  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||    
T  37488260 ttcttaatagtttctcttatagtttttctaggtctacctctgcctatg 37488213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 8599054 - 8599090
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8599054 ttcttaatagtttctcttatagtttttctaggtcttc 8599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 38903831 - 38903874
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  38903831 ttcttaatagtttctcttatag-ttttctaggtcttcatctgcct 38903874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 10209205 - 10209171
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtct 117  Q
    |||||||||||||| ||||||||||||||||||||    
T  10209205 ttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 35555761 - 35555794
Alignment:
Q  84 tcttaatagtttcacttatagtttttctaggtct 117  Q
    ||||||||||||| ||||||||||||||||||||    
T  35555761 tcttaatagtttctcttatagtttttctaggtct 35555794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 35690445 - 35690404
Alignment:
Q  78 aattattcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||| ||| |||||||||| ||||||||||||||||||||||    
T  35690445 aatttttcgtaatagtttctcttatagtttttctaggtcttc 35690404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 40228123 - 40228163
Alignment:
Q  87 taatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  40228123 taatagtttcacttatagtttttctaggtcttcgtctgcct 40228163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 38869051 - 38869007
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||    
T  38869051 ttcttaataatttctcttatagtttttctaggtcttcttctgcct 38869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 50771669 - 50771705
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50771669 ttcttaatagtttcgcttatagtttttctaggtcttc 50771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 51584912 - 51584877
Alignment:
Q  84 tcttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||||| ||||||||||||||||||||||    
T  51584912 tcttaatagtttctcttatagtttttctaggtcttc 51584877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 8203250 - 8203283
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||| ||||||||||||||||||||||    
T  8203250 ttaatagtttctcttatagtttttctaggtcttc 8203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 19969328 - 19969361
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||| ||||||||||||||||||||||    
T  19969328 ttaatagtttctcttatagtttttctaggtcttc 19969361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 40416540 - 40416499
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctg 124  Q
    |||||||||||||  |||||||||||||||||||||| ||||    
T  40416540 ttcttaatagtttgtcttatagtttttctaggtcttcttctg 40416499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 52073164 - 52073209
Alignment:
Q  82 attcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  52073164 attcataatagtttcaattaaagtttttctaggtcttcctctgcct 52073209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 4011252 - 4011211
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctg 124  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  4011252 ttcttaatagtttctcttatagtttttctaggtcttcctctg 4011211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 35643719 - 35643763
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||    
T  35643719 ttcttaataatttctcttatagtttttctaggtcttcctctgcct 35643763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 45512612 - 45512652
Alignment:
Q  87 taatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  45512612 taatagtttctcttatagtttttctaggtcttcctctgcct 45512652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 5908812 - 5908779
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||| ||||||||||||||||||||||    
T  5908812 ttaatagtttctcttatagtttttctaggtcttc 5908779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 9904998 - 9905035
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttcatct 123  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  9904998 ttaatagtttctcttgtagtttttctaggtcttcatct 9905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 16994556 - 16994593
Alignment:
Q  82 attcttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  16994556 attcttaatagtttctcatatagtttttctaggtcttc 16994593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 38178376 - 38178409
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||| ||||||||||||||||||||||    
T  38178376 ttaatagtttctcttatagtttttctaggtcttc 38178409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45419487 - 45419450
Alignment:
Q  1 tggggtcggctacatggatcaaatta-accataatgtt 37  Q
    |||||||||||||||||||||||||| |||||||||||    
T  45419487 tggggtcggctacatggatcaaattacaccataatgtt 45419450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 38135329 - 38135370
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  38135329 ttaatagtttctcttatactttttctaggtcttcatctgcct 38135370  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 12966185 - 12966149
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  12966185 ttcttaatagtttctcttatagtttttctaggtcttc 12966149  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 14593929 - 14593893
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14593929 ttcttaatagtttctcttatagtttttctaggtcttc 14593893  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16013452 - 16013416
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16013452 ttcttaatagtttctcttatagtttttctaggtcttc 16013416  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 30814784 - 30814828
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||    
T  30814784 ttcttaatagtttctcttatagtgtttctaggtcttcctctgcct 30814828  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 21517496 - 21517530
Alignment:
Q  86 ttaatagtttcacttatagtttttctaggtcttca 120  Q
    ||||||||||| |||||||||||||||||||||||    
T  21517496 ttaatagtttctcttatagtttttctaggtcttca 21517530  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25891140 - 25891103
Alignment:
Q  1 tggggtcggctacatggatcaaatta-accataatgtt 37  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25891140 tggggtcggctacatggatcaaattacaccataatgtt 25891103  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 37976397 - 37976368
Alignment:
Q  90 tagtttcacttatagtttttctaggtcttc 119  Q
    ||||||||||||||||||||||||||||||    
T  37976397 tagtttcacttatagtttttctaggtcttc 37976368  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 40830371 - 40830330
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctg 124  Q
    |||||||||||||| ||||||| |||||||||||||| ||||    
T  40830371 ttcttaatagtttctcttatagattttctaggtcttcctctg 40830330  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 34618 - 34662
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||    
T  34618 ttcttaatggtttctcttatagtttttctaggtcttcctctgcct 34662  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 8364725 - 8364685
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatct 123  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  8364725 ttcttaatagtttctcttatagtttttttaggtcttcatct 8364685  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18130844 - 18130881
Alignment:
Q  1 tggggtcggctacatggatcaaatta-accataatgtt 37  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18130844 tggggtcggctacatggatcaaattacaccataatgtt 18130881  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 11581613 - 11581577
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11581613 ttcttaatagtttctcttatagtttttctaggtcttc 11581577  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 31261055 - 31261099
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    ||||| |||||||| |||||||||||||||||||||| |||||||    
T  31261055 ttcttgatagtttctcttatagtttttctaggtcttcctctgcct 31261099  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 39600794 - 39600830
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39600794 ttcttaatagtttctcttatagtttttctaggtcttc 39600830  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 54365092 - 54365132
Alignment:
Q  87 taatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  54365092 taatagtttctcttatagtttttctaggtcttcctctgcct 54365132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24778639 - 24778676
Alignment:
Q  1 tggggtcggctacatggatcaaatta-accataatgtt 37  Q
    |||||||||||||||||||||||||| |||||||||||    
T  24778639 tggggtcggctacatggatcaaattacaccataatgtt 24778676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 26784453 - 26784497
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttcatctgcct 127  Q
    |||||||||||||| |||||||||||||||||||||  |||||||    
T  26784453 ttcttaatagtttctcttatagtttttctaggtctttctctgcct 26784497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 33287590 - 33287554
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtcttc 119  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33287590 ttcttaatagtttctcttatagtttttctaggtcttc 33287554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3720445 - 3720482
Alignment:
Q  1 tggggtcggctacatggatcaaatta-accataatgtt 37  Q
    |||||||||||||||||||||||||| |||||||||||    
T  3720445 tggggtcggctacatggatcaaattacaccataatgtt 3720482  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 178533 - 178568
Alignment:
Q  83 ttcttaatagtttcacttatagtttttctaggtctt 118  Q
    |||||||||||||| |||||||||||||||||||||    
T  178533 ttcttaatagtttctcttatagtttttctaggtctt 178568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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