View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_high_32 (Length: 238)
Name: NF19060_high_32
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 34933828 - 34933612
Alignment:
| Q |
16 |
catgtgctagctctttctttcaattcctctctatgatccttcttctagttacactcccttctatgctatcaacaataaccttggctagtggattctcaat |
115 |
Q |
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| T |
34933828 |
catgtgctagctctttctttcaattcctctctatgatcgttcttctagttacactcccttctatgctatcaacaacaaccttggctagtggattctcaat |
34933729 |
T |
|
| Q |
116 |
caaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgaattctacctcaaccaaatcaatatccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||| |
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| T |
34933728 |
caaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgagttttacctcaaacaaatcaaaatccaa |
34933629 |
T |
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| Q |
216 |
aacccagttctcaaagg |
232 |
Q |
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||||| ||||||||||| |
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| T |
34933628 |
aacccggttctcaaagg |
34933612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 34929734 - 34929515
Alignment:
| Q |
16 |
catgtgctagctctttctttcaattcctctctatgatccttcttctagttacactcccttctatgctatcaacaataaccttggctagtggattctcaat |
115 |
Q |
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|||||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||||||||||||| ||||||| |||||| ||||||| |
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| T |
34929734 |
catgtgctagctctttctttcaattcctttctataacccttctactagttacactctcttctatgctatcaacaa---ccttggcaagtggaatctcaat |
34929638 |
T |
|
| Q |
116 |
caaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgaattctacctcaaccaaatcaatatccaa |
215 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |
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| T |
34929637 |
caaggaagcaactgtgcaagatctccaacttgctttccaaagaaagcagttaacatcaagacaacttgttgagttttacctcaaacaaatcaatatccaa |
34929538 |
T |
|
| Q |
216 |
aacccagttctcaaaggagtctt |
238 |
Q |
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||||||||||||||||| ||||| |
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| T |
34929537 |
aacccagttctcaaaggtgtctt |
34929515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 34913337 - 34913191
Alignment:
| Q |
92 |
aaccttggctagtggattctcaatcaaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgaattc |
191 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||| || || || ||||||||||| || ||||||||||||||||||||||| || |
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| T |
34913337 |
aaccttggccagtgaattctcaatcaaggaagcaactgtgcaagatcttcaactagctttccaaagaaaccaattaacatcaagacaacttgttgagttt |
34913238 |
T |
|
| Q |
192 |
tacctcaaccaaatcaatatccaaaacccagttctcaaaggagtctt |
238 |
Q |
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| T |
34913237 |
tacctcaaccaaatcaaaatacaaaacccagttctaaaaggagtctt |
34913191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 34899483 - 34899352
Alignment:
| Q |
107 |
attctcaatcaaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgaattctacctcaaccaaatc |
206 |
Q |
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||||||| ||||||||||||| |||||||||||||| || || ||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
34899483 |
attctcagtcaaggaagcaaccgtgcaagatctccaactagctttccaaacaaaacagttaacatcaagacagcttgttgagttctatctcaaccaaatc |
34899384 |
T |
|
| Q |
207 |
aatatccaaaacccagttctcaaaggagtctt |
238 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
34899383 |
aatatccaaaacccagttctcaaaggtgtctt |
34899352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 34922908 - 34922777
Alignment:
| Q |
107 |
attctcaatcaaggaagcaactgtgcaagatctccagcttgccttccaaagaaagcagttaacatcaagacaacttgttgaattctacctcaaccaaatc |
206 |
Q |
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||||||||| |||||||||| || |||||||| || || || || |||| ||| || |||||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
34922908 |
attctcaattgaggaagcaacagtacaagatcttcaactagcttttcaaacaaaccaattaacatcaagacagcttgttgagttctatctcaatcaaatc |
34922809 |
T |
|
| Q |
207 |
aatatccaaaacccagttctcaaaggagtctt |
238 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34922808 |
aatatccaaaacccagttctcaaaggagtctt |
34922777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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