View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_high_7 (Length: 468)
Name: NF19060_high_7
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 36702546 - 36702111
Alignment:
| Q |
11 |
atgaacataactaaaaagaaacttacagtgaatcccttgcttgtaaatcctcatcaaacaaaactctaggaagtttgtccaagaattgcacggtcaaatc |
110 |
Q |
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| T |
36702546 |
atgaacataactaaaaagaaacttacagtgaatcccttgcttgtaaatcctcatcaaacaaaactctaggaagtttgtccaagaattgcacggtcaaatc |
36702447 |
T |
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| Q |
111 |
caatcgacgaggctatagattattaacaagagacaactataagatgacttaattaatctatatatggtgcaaagaaataattaagcaagcaagaaagcta |
210 |
Q |
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| T |
36702446 |
caatcgacgaggctatagattattaacaagagacaactataagatgacttaattaatctatat--ggtgcaaagaaataattaagcaagcaagaaagcta |
36702349 |
T |
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| Q |
211 |
acatgtaaatattttcactttggcatccaacctaacaatttcggcattaccagatgagctaggctttacggactccactttggtattattagaaactaaa |
310 |
Q |
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| T |
36702348 |
acatgtaaatattttcactttggcatccaacttaacaatttcggcattaccagatgagctaggctttacggactccactttggtattattagaaactaaa |
36702249 |
T |
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| Q |
311 |
taaaccaaatgaaaagtaatgaattgaatgaacttactgaggaagatgaataataacgataggtagttggaggaatattgatccttggaagcaagtgtgg |
410 |
Q |
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| T |
36702248 |
taaaccaaatgaaaagtaatgaattgaatgaacttactgaggaagatgaataataacgataggtagttggaggaatattgatccttggaagcaagtgtgg |
36702149 |
T |
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| Q |
411 |
agagaaagaagaagctcttctcttgagatagaacaagt |
448 |
Q |
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| T |
36702148 |
agagaaagaagaagctcttctcttgagatagaacaagt |
36702111 |
T |
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