View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19060_high_8 (Length: 460)
Name: NF19060_high_8
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 118 - 442
Target Start/End: Complemental strand, 20690031 - 20689708
Alignment:
| Q |
118 |
tgggagagcgaaaggtttctgcattaccccaaccaaacacatactagaaaacatatatatagtacttgttggacagaaataaacatctgcagtaaatcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20690031 |
tgggagagcgaaaggtttctgcattaccccaaccaaacacatactagaaaacatatatatagtacttgttggacagaaataaacatctgcagtaaatcta |
20689932 |
T |
|
| Q |
218 |
cacaaagcagtaaccatggttactttttacccactctactaaccacacatccaccacaacttgaatacaaacttaatagacatattacaacttcaagtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20689931 |
cacaaagcagtaaccatggttactttttacccactctactaaccacacatccac-accacttgaatacaaacttaatagacatattacaacttcaagtac |
20689833 |
T |
|
| Q |
318 |
tttagagaagtttcaaattcaaatagttactatagcttatactagagtcagatagaaatcttctttgtcaccccaatcctcataagagcaaaataagcca |
417 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20689832 |
tttagagaagattcaaattctaatagttactatagcttatactagagtcagatagaaatcttctttgtcaccccaatcctcataagagcaaaataagcca |
20689733 |
T |
|
| Q |
418 |
taagtctaaaacctattagcattat |
442 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
20689732 |
taagtctataacctattagcattat |
20689708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 20690137 - 20690061
Alignment:
| Q |
11 |
cacagaccctatatatcaatgaagctttcataccatattagaaaaacataagcatcaacaattggaggcgataacaa |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20690137 |
cacagaccctatatatcaatgaagctttcataccatattagaaaaacataagcatcaacaattggaggcaataacaa |
20690061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 33721008 - 33720944
Alignment:
| Q |
378 |
ttctttgtcaccccaatcctcataagagcaaaataagccataagtctaaaacctattagcattat |
442 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
33721008 |
ttctttgtgactccaatcctcataagagcacaataagctataagtctataaccaattagcattat |
33720944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University