View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_12 (Length: 449)
Name: NF19060_low_12
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 9610319 - 9610742
Alignment:
| Q |
9 |
acatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattctctaagcttacaagcttaggaag |
108 |
Q |
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| T |
9610319 |
acatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattctctaagcttacaagcttaggaag |
9610418 |
T |
|
| Q |
109 |
atctactttgtttggttcttcaataacagcttttcttttccaatatttgcagtggagaaccagctggaggattcctaagggagttccaatcacacttggt |
208 |
Q |
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| T |
9610419 |
atctactttgtttggttcttcaataacaacttttcttttccaatatttgcagtggagaaccagctggaggattcctaagggagttccaatcacacttggt |
9610518 |
T |
|
| Q |
209 |
ccctattaaaaccaacaacatcaatgtcaataagattctcttatgttattaataattttaattatcaaataaattatccgaaaatgacacaaaccgcaac |
308 |
Q |
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| T |
9610519 |
ccctattaaaaccaacaacatcaatgtcaataagattatcttatgttattaataattttaattatcaaataaattatccgaaaatgacacaaaccgcaac |
9610618 |
T |
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| Q |
309 |
gaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtggcatgaattccacactctttgtt |
408 |
Q |
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| T |
9610619 |
gaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataaaggtagtggcatgaattccacactctttgtt |
9610718 |
T |
|
| Q |
409 |
tgtatcactttcttctgcaataac |
432 |
Q |
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| T |
9610719 |
tgtatcacttttttctgcaataac |
9610742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 428
Target Start/End: Complemental strand, 41307798 - 41307667
Alignment:
| Q |
297 |
acaaaccgcaacgaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtggcatgaattcc |
396 |
Q |
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|||||||||||| |||| ||| | || || | |||||||| | ||| ||||||||||| | || | |||||| |||||||||||||||||||||||| |
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| T |
41307798 |
acaaaccgcaacaaatacatcacgaacaaggattccataagctaaccagaatacactagctgaaaaagcacacaaagataatggtagtggcatgaattcc |
41307699 |
T |
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| Q |
397 |
acactctttgtttgtatcactttcttctgcaa |
428 |
Q |
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| T |
41307698 |
acactctttgtttgtatcactttcttctgcaa |
41307667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 41297834 - 41297772
Alignment:
| Q |
366 |
acacaatgataatggtagtggcatgaattccacactctttgtttgtatcactttcttctgcaa |
428 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |
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| T |
41297834 |
acacaaggataatggtagtggcatgaattcaacactctttgtttctataactttcttctgcaa |
41297772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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