View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19060_low_14 (Length: 410)
Name: NF19060_low_14
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_14 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 40843658 - 40844067
Alignment:
| Q |
1 |
acatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40843658 |
acatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactcc |
40843757 |
T |
|
| Q |
101 |
ttaaatgttgtctgacctgaccacttcatggcatcaacccacctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40843758 |
ttaaatgttgtctgacctgaccacttcatggcatcaacccacctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgta |
40843857 |
T |
|
| Q |
201 |
tcttgtttaagattggaaaaattaattgagcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40843858 |
tcttgtttaagattggaaaaattaattgagcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaaga |
40843957 |
T |
|
| Q |
301 |
agagtaggaatacccacttcaagatttttcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacaccta |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40843958 |
agagcaggaatacccacttcaagatttttcatccaatcctccgtcaaggcagcatgtactaagaaactgcaatattcaaatttcaagtccccaacaccta |
40844057 |
T |
|
| Q |
401 |
aagcttcctt |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
40844058 |
aagcttcctt |
40844067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 40839063 - 40839222
Alignment:
| Q |
24 |
ggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgacca |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
40839063 |
ggaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgacctgacca |
40839162 |
T |
|
| Q |
124 |
cttcatggcatcaacccacctcgaattccctaacaaatgagaagcacatttagagttcta |
183 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
40839163 |
cttcatggcatcaatccaccttgaattccctaccaaatgagaagcacatttagaattcta |
40839222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 40839448 - 40839629
Alignment:
| Q |
229 |
agcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40839448 |
agcttaccaagccaattgcatattagatctttttctccggcatacacaagtaacttgattccatcctcaagaagagcaggaatacccacttcaagatttt |
40839547 |
T |
|
| Q |
329 |
tcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctt |
410 |
Q |
| |
|
|||||||||||| | || || | || |||| | ||||||| | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
40839548 |
tcatccaatcctgcaacatggtattgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcctt |
40839629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 217 - 408
Target Start/End: Original strand, 40849988 - 40850179
Alignment:
| Q |
217 |
aaaaattaattgagcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaataccca |
316 |
Q |
| |
|
||||| |||| || ||||||||||||||||||||| ||||||| |||||| || |||||||| | ||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
40849988 |
aaaaagtaatcgaacttaccaagccaattgcatatgagatcttcttctccagcatacacaagcaccttgattccatcctccagaagagcaggaataccaa |
40850087 |
T |
|
| Q |
317 |
cttcaagatttttcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| || |||| | ||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
40850088 |
cttcaagatttttcatccaatcctgcaacatggcactgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcc |
40850179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 40849598 - 40849773
Alignment:
| Q |
1 |
acatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactcc |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | |||||| |||||||||||| ||||||||||||||||||||||||| ||| || ||||||||| || |
|
|
| T |
40849598 |
acatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacacc |
40849697 |
T |
|
| Q |
101 |
ttaaatgttgtctgacctgaccacttcatggcatcaacccacctcgaattccctaac-aaatgagaagcacattta |
175 |
Q |
| |
|
|||||| | | |||||||||||| |||||||||| |||||||| ||||||||| | ||||||||| |||||||| |
|
|
| T |
40849698 |
ttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgccaaaatgagaaacacattta |
40849773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 19574291 - 19574395
Alignment:
| Q |
231 |
cttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttc |
330 |
Q |
| |
|
|||||||||||| |||||||| ||||| | ||| || || || ||||| || | |||||||||||||||||| |||||||||| ||||||||||| || |
|
|
| T |
19574291 |
cttaccaagccagttgcatatgagatcatattccccagcataaacaagcaaatcgattccatcctcaagaaggataggaataccaacttcaagattcctc |
19574390 |
T |
|
| Q |
331 |
atcca |
335 |
Q |
| |
|
||||| |
|
|
| T |
19574391 |
atcca |
19574395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 42339020 - 42338914
Alignment:
| Q |
233 |
taccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttcat |
332 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||| || || || ||||| || ||||||||||||||||| || | ||||||||| ||||||||||| |||| |
|
|
| T |
42339020 |
taccaagccagttgcagatgagatcatattccccagcataaacaagcaaattgattccatcctcaagcagggcaggaataccgacttcaagattcctcat |
42338921 |
T |
|
| Q |
333 |
ccaatcc |
339 |
Q |
| |
|
||||||| |
|
|
| T |
42338920 |
ccaatcc |
42338914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University