View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_15 (Length: 393)
Name: NF19060_low_15
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_15 |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 8626388 - 8626091
Alignment:
| Q |
15 |
tcacaattaagacatcgtactagtaattcataattccaatnnnnnnnnn-tactcaaagttcccatttgtaatggtagcacctgcattggagaaactaat |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8626388 |
tcacaattaagaaatcgtactagtaattcataattccaattaaaaaaaaatactcaaagttcccatttgtaatggtagcatctgcattggagaaactaat |
8626289 |
T |
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| Q |
114 |
caaattaacaattcaataaatgcatatagcaccgacacctctaatcgttggtgtatccggtgtccgacaactatacaaatgattacgtttaaataattca |
213 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
8626288 |
caaattaacaattcaataaatgcatgtagcaccaacacctctaatcgttggtgtatccggtgtccgacaactatataagtgattacgtttaaataattca |
8626189 |
T |
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| Q |
214 |
ttttctcaaattatttggaagagtatatgtgcagcttacattggtttatttgatgacaatttatatgaaaacaatgaactacattacattcacttctt |
311 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8626188 |
ttttctcaaattatttgaaagagcatatgtgcagcttacattggtttatttgatgacaatttatatgaaaacaatgaactacattacattcacttctt |
8626091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 3501037 - 3501094
Alignment:
| Q |
77 |
catttgtaatggtagcacctgcattggagaaactaatcaaattaacaattcaataaat |
134 |
Q |
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| T |
3501037 |
catttgtaatggtaacatctgcattggagaaactaatcaaattaataattcaataaat |
3501094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 6073792 - 6073756
Alignment:
| Q |
192 |
atgattacgtttaaataattcattttctcaaattatt |
228 |
Q |
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| T |
6073792 |
atgattacgttcaaataattcattttctcaaattatt |
6073756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 6074072 - 6074036
Alignment:
| Q |
192 |
atgattacgtttaaataattcattttctcaaattatt |
228 |
Q |
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| T |
6074072 |
atgattacgttcaaataattcattttctcaaattatt |
6074036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 22745562 - 22745591
Alignment:
| Q |
195 |
attacgtttaaataattcattttctcaaat |
224 |
Q |
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| T |
22745562 |
attacgtttaaataattcattttctcaaat |
22745591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 15086771 - 15086707
Alignment:
| Q |
164 |
gtgtatccggtgtccgacaactatacaaatgattacgtttaaataattcattttctcaaattatt |
228 |
Q |
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|||| |||||||||||||| | | ||| |||||||||| |||||||||| |||||||||||||| |
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| T |
15086771 |
gtgtgtccggtgtccgacaccaacacatgtgattacgttcaaataattcactttctcaaattatt |
15086707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 843156 - 843191
Alignment:
| Q |
193 |
tgattacgtttaaataattcattttctcaaattatt |
228 |
Q |
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| T |
843156 |
tgattacgttcaaataattcattttctcaaattatt |
843191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 4391 - 4363
Alignment:
| Q |
200 |
gtttaaataattcattttctcaaattatt |
228 |
Q |
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| T |
4391 |
gtttaaataattcattttctcaaattatt |
4363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 21768647 - 21768615
Alignment:
| Q |
196 |
ttacgtttaaataattcattttctcaaattatt |
228 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
21768647 |
ttacgttcaaataattcattttctcaaattatt |
21768615 |
T |
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