View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_19 (Length: 367)
Name: NF19060_low_19
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 10366367 - 10366718
Alignment:
| Q |
1 |
aaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaattt |
100 |
Q |
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| T |
10366367 |
aaaagttttcttttatgagaatgtgctgaatggagatgttccaatcctcaactagataatttcgaattagctctaagaggttggtataatgatgaaattt |
10366466 |
T |
|
| Q |
101 |
cagtgtctcttttaccactaaatgaactacatggagaaaatcagaaaataacataannnnnnngaagcacacttaccaatggagagtaatttctgttaga |
200 |
Q |
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| T |
10366467 |
cagtgtctcctttaccactaaatgaactacatggagaaaatcagaaaatgacataatttttttgaagcacactcaccaacagagagtaatttccgttaga |
10366566 |
T |
|
| Q |
201 |
gtttgaatctctgcatgtaaaacgtttgacaaaccacactatcatagaaaccaaattaaaa-ttgctcgtaagagtgattacgcacaatactaccatagt |
299 |
Q |
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| T |
10366567 |
gtttgaatctctgcatgtaaaacgtttgacaaaccacactatcatagaaaccaaattaaaatttgctcgtaagagtggttacgcacaataccaccatagt |
10366666 |
T |
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| Q |
300 |
ctgcttgtctcggattcatcgtgcaccaccatcaacatttaggaccaaagtg |
351 |
Q |
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| T |
10366667 |
ctgcttgtctcggattcatcgtgcaccactatcagcatttaggaccaaagtg |
10366718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 15976877 - 15976784
Alignment:
| Q |
43 |
aatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag |
136 |
Q |
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| T |
15976877 |
aatccttaactaaataacttcgaattagctccagggggttggcataatgattaaacctcgatgtctcctttgccgctaactgaactacatggag |
15976784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 45057238 - 45057329
Alignment:
| Q |
5 |
gttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaa |
97 |
Q |
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| T |
45057238 |
gtttccttctatgagaatgtggtga-tggagatgtctcaatccttaacaagataactttaaattagctgaaggaggttggcataatgatgaaa |
45057329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 37127046 - 37127004
Alignment:
| Q |
54 |
agataactttgaattagctctaagaggttggcataataatgaa |
96 |
Q |
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| T |
37127046 |
agataactttgaattatctctaagaggttagcataatgatgaa |
37127004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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