View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19060_low_2 (Length: 1047)
Name: NF19060_low_2
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_2 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| |
|
| [»] scaffold0038 (3 HSPs) |
| | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Complemental strand, 28096266 - 28095646
Alignment:
| Q |
18 |
gaaggttgtaggaagctcaagagttttccacccattcaattgacctctctggaactacttagactgtcatattgttataggcttaggaactttccagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28096266 |
gaaggttgtaggaagctcaagagttttccacccattcaattgacctctctggaactacttagactgtcatattgttataggcttaggaactttccagaaa |
28096167 |
T |
|
| Q |
118 |
tattaggaaagatggaaaacctagaaagcannnnnnngaaagagacatccataaaagaattgcctaattcatttcaaaatctcatcgggcttcgaaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28096166 |
tattaggaaagatggaaaacctagaaagcatttttttgaaagagacatccataaaagaattgcctaattcatttcaaaatctcagcgggcttcgaaattt |
28096067 |
T |
|
| Q |
218 |
actcttagatggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaattgtcttgggttcttgttcagggtcgccatctattgcca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28096066 |
actcttagatggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaattgtcttgggttcttgttcagggtcgccatctattgcca |
28095967 |
T |
|
| Q |
318 |
aaacaatgtgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaataattttta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28095966 |
aaacaatgtgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaataattttta |
28095867 |
T |
|
| Q |
418 |
agtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaagaacttcgttccttagagagactctatct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28095866 |
agtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaagaacttcgttccttagagagactctatct |
28095767 |
T |
|
| Q |
518 |
ggattgttgcaagcttcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28095766 |
ggattgttgcaagcttcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagc |
28095667 |
T |
|
| Q |
618 |
atgctacttactcaggttttg |
638 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
28095666 |
atgctactggatcaggttttg |
28095646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 524 - 1047
Target Start/End: Complemental strand, 2170946 - 2170424
Alignment:
| Q |
524 |
ttgcaagcttcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagcatgcta |
623 |
Q |
| |
|
||||||| ||| |||||||||| || ||||| |||| |||||||| ||||||||| || | ||| | || |||| |||||||||||||||||||||| |
|
|
| T |
2170946 |
ttgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgcta |
2170847 |
T |
|
| Q |
624 |
cttactcaggttttgtattataactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgt |
723 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170846 |
cttactcaggttttgtat-ataactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgt |
2170748 |
T |
|
| Q |
724 |
gcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggttt |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170747 |
gcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggttt |
2170648 |
T |
|
| Q |
824 |
cgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaa |
923 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170647 |
cgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaa |
2170548 |
T |
|
| Q |
924 |
ccaatatctataaatatgatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgca |
1023 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170547 |
ccaatatctataaatatgatattgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgca |
2170448 |
T |
|
| Q |
1024 |
agagatgaaactcgaatctgtact |
1047 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2170447 |
agagatgaaactcgaatctgtact |
2170424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 602 - 1043
Target Start/End: Original strand, 2187750 - 2188192
Alignment:
| Q |
602 |
ttcctcatgtagaagcatgctacttactcaggttttgtatt-------ataactatctgacttcatatttgatatttcataatgattttacttgctaaac |
694 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
2187750 |
ttcctcatgtagaagcatgctacttagtcaggttttgtattttgttttatatctatttgacttcatttttaatatttcataatgatttttcttgctaaac |
2187849 |
T |
|
| Q |
695 |
ttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaa |
794 |
Q |
| |
|
|||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
2187850 |
ttgttagttctttacaaataacagcatttgcatgaagatggaggcaccgagtttagtttggcaggaagtgctagggttccagagtggtttgatcaccaaa |
2187949 |
T |
|
| Q |
795 |
gcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtga |
894 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
2187950 |
gcgagggaccatcaatttctttttggtttcgtggcaggttcccttccatagctctcttcgttgctagtctatcaacggataacaggcatcccaacagtga |
2188049 |
T |
|
| Q |
895 |
ttttccttcattaacagcctatctgagaaccaatatctataaatatgatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagat |
994 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2188050 |
ttttctttcattaacagcccatctgagaac------ctataccgatggtattgagtttgacatcaacagtgtcgatctcaatctcgtgatacaaccagat |
2188143 |
T |
|
| Q |
995 |
catacatatctatatgatctacgactgcaagagatgaaactcgaatctg |
1043 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||| |||||||||||| |
|
|
| T |
2188144 |
catacatatctatatgatctgcgacagcaagtgatggaactcgaatctg |
2188192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 226 - 481
Target Start/End: Original strand, 28151630 - 28151885
Alignment:
| Q |
226 |
atggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaattgtcttgggttcttgttcagggtcgccatctattgccaaaacaatg |
325 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||| ||||| |||||||| || | |
|
|
| T |
28151630 |
atggatttggaatgtttcttaggttaccaagtaatattctgatgatgccaaaattgtcttggattgatgttcagggttatcatctgttgccaaaccagag |
28151729 |
T |
|
| Q |
326 |
tgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaataatttttaagtggttt |
425 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||||||| | | ||||||||| ||||| ||||||| ||||||||||| | ||||||||| |
|
|
| T |
28151730 |
tgataaaccaagtcccatggtgtccacaaatgtacaatctcttgtgcatagaaaatgcaaccgaacagatgaatcttttccaataattctcaagtggttt |
28151829 |
T |
|
| Q |
426 |
gctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatg |
481 |
Q |
| |
|
|| ||| ||||| | ||| |||||| || |||||| ||||||||||||||||||| |
|
|
| T |
28151830 |
gccaatatgacacacttagacttattgaagagtaatttcacaattcttccggaatg |
28151885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 713 - 881
Target Start/End: Original strand, 28142629 - 28142797
Alignment:
| Q |
713 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
812 |
Q |
| |
|
|||||||| ||||||| | |||| |||| || ||| ||| |||||||| | |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
28142629 |
taacaggaactgcatgaggctggaagcacagattttcgttgggcaggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaatta |
28142728 |
T |
|
| Q |
813 |
ctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagc |
881 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||| || ||||||||| |
|
|
| T |
28142729 |
ctttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatccataaataacaagc |
28142797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 26341278 - 26340895
Alignment:
| Q |
18 |
gaaggttgtaggaagctcaagagttttccacccattcaattgacctctctggaactacttagactgtcatattgttataggcttaggaactttccagaaa |
117 |
Q |
| |
|
||||||||||| | ||| | ||||||||||| ||| | ||||| ||||| ||| ||| |||| |||| ||||||||| |||| |||||||||||||| |
|
|
| T |
26341278 |
gaaggttgtagcaggcttagaagttttccaccaattaagttgacttctcttcaacagcttcgactttcattttgttatagtcttaagaactttccagaaa |
26341179 |
T |
|
| Q |
118 |
tattaggaaagatggaaaacctagaaagcannnnnnngaaagagacatccataaaagaattgcctaattcatttcaaaatctcatcgggcttcgaaattt |
217 |
Q |
| |
|
|||||||||||||||||||| | | ||||| | || || ||||| ||||||||||| |||| ||||||||||||| || |||| |||| |
|
|
| T |
26341178 |
tattaggaaagatggaaaacattggaagcatttctttaagtgaaacttccattgaagaattgcctgattcgtttcaaaatctcactggacttcattattt |
26341079 |
T |
|
| Q |
218 |
actcttagatggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaattgtcttgggttcttgttcagggtcgccatctattgcca |
317 |
Q |
| |
|
||| |||| ||| | ||| ||| ||| |||||||||||| ||||||| ||||||||||| || |||| | ||| |||||| | || |
|
|
| T |
26341078 |
actactagaaggacatggaacgttgcttgggttaccaagta---------tgatgcctaaattgtcttgcatttttgtcgatggttatcatctacttccg |
26340988 |
T |
|
| Q |
318 |
aaacaatgtgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaata |
410 |
Q |
| |
|
||| | ||||||||||||| ||||||||| ||||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
26340987 |
aaagagactgataaaccaagtaccatggtgtgttcaaatgtacaatctattgtgctaacagaatgcaacctaacggatgaatctcttccaata |
26340895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 713 - 851
Target Start/End: Original strand, 28246359 - 28246497
Alignment:
| Q |
713 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
812 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| | ||| |||| ||||| ||| ||||||||||| ||||||||||| ||||||| ||||| |||||| |
|
|
| T |
28246359 |
taacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaattt |
28246458 |
T |
|
| Q |
813 |
ctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
28246459 |
ctttttggtttcgtaacaagctcccttccatggctctct |
28246497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 713 - 851
Target Start/End: Original strand, 28525229 - 28525367
Alignment:
| Q |
713 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
812 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| |||| ||||| ||||| ||| ||||||||||||||||||||||| |||| || ||||| |||||| |
|
|
| T |
28525229 |
taacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaattt |
28525328 |
T |
|
| Q |
813 |
ctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| ||||||| |
|
|
| T |
28525329 |
ctttttggtttcgtaacaacctcccttccattgctctct |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 767 - 851
Target Start/End: Original strand, 28239435 - 28239519
Alignment:
| Q |
767 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| |||||||||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
28239435 |
aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28239519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 28239062 - 28239157
Alignment:
| Q |
395 |
tgaatctcttccaataatttttaagtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaaga |
490 |
Q |
| |
|
||||| ||||||||||||| | | ||||| |||||||||| |||| ||| || ||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
28239062 |
tgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaatgcatcaaaga |
28239157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 768 - 826
Target Start/End: Original strand, 26805556 - 26805614
Alignment:
| Q |
768 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
826 |
Q |
| |
|
|||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
26805556 |
ggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt |
26805614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 871
Target Start/End: Original strand, 29829103 - 29829203
Alignment:
| Q |
771 |
ttccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaat |
870 |
Q |
| |
|
|||||||||||||||| || |||| | ||| |||||||| ||||| ||||||||| ||| | |||| ||||| | |||||||||| | |||||||||| |
|
|
| T |
29829103 |
ttccagagtggtttgagcaccaaaatagggggccatcaatatctttttggtttcgtaacaagctccccaccataaccctcttcgttgtttgtaaatcaat |
29829202 |
T |
|
| Q |
871 |
g |
871 |
Q |
| |
|
| |
|
|
| T |
29829203 |
g |
29829203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 616
Target Start/End: Original strand, 26638191 - 26638274
Alignment:
| Q |
533 |
tcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaag |
616 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||| | ||||||||| || | ||||| || |||||||||||| ||||||| |
|
|
| T |
26638191 |
tcttgaagaaattagagggattccaccaaatctaaattacttgtctgcaatggaatgcgattcattgagttcctcaagtagaag |
26638274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 616
Target Start/End: Original strand, 26744157 - 26744240
Alignment:
| Q |
533 |
tcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaag |
616 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||| | ||||||||| || | ||||| || |||||||||||| ||||||| |
|
|
| T |
26744157 |
tcttgaagaaattagagggattccaccaaatctaaattacttgtctgcaatggaatgcgattcattgagttcctcaagtagaag |
26744240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 768 - 826
Target Start/End: Complemental strand, 27715626 - 27715568
Alignment:
| Q |
768 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
826 |
Q |
| |
|
|||| ||||| |||||||| || ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
27715626 |
ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt |
27715568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 767 - 853
Target Start/End: Original strand, 28152278 - 28152364
Alignment:
| Q |
767 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttc |
853 |
Q |
| |
|
||||||||||||| |||| | || || |||| | ||| | |||||||||||||||||| | ||| | |||||||||| ||||||||| |
|
|
| T |
28152278 |
aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttc |
28152364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 401 - 490
Target Start/End: Original strand, 28524927 - 28525016
Alignment:
| Q |
401 |
tcttccaataatttttaagtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaaga |
490 |
Q |
| |
|
|||||||||| || | | ||||| ||||||||||| || ||| || ||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
28524927 |
tcttccaatacttgtcatgtggtctgctaatgtgaaaatattagacctatcaggaaataatttcacaattcttccagaatgcatcaaaga |
28525016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 806 - 851
Target Start/End: Complemental strand, 29671593 - 29671548
Alignment:
| Q |
806 |
tcaatttctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| |||||||||||| |
|
|
| T |
29671593 |
tcaatttctttctggtttcgtaacaagtttcctgccatagctctct |
29671548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 524 - 1047
Target Start/End: Original strand, 12315 - 12837
Alignment:
| Q |
524 |
ttgcaagcttcttcaagaaattagagcaattccaccaaatttaaaattcttgtctgcgataaattgcgagtctttgagttcctcatgtagaagcatgcta |
623 |
Q |
| |
|
||||||| ||| |||||||||| || ||||| |||| |||||||| ||||||||| || | ||| | || |||| |||||||||||||||||||||| |
|
|
| T |
12315 |
ttgcaagtatctccaagaaattacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgcta |
12414 |
T |
|
| Q |
624 |
cttactcaggttttgtattataactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgt |
723 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12415 |
cttactcaggttttgtat-ataactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgt |
12513 |
T |
|
| Q |
724 |
gcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggttt |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12514 |
gcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggttt |
12613 |
T |
|
| Q |
824 |
cgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaa |
923 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12614 |
cgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaa |
12713 |
T |
|
| Q |
924 |
ccaatatctataaatatgatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgca |
1023 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12714 |
ccaatatctataaatatgatattgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgca |
12813 |
T |
|
| Q |
1024 |
agagatgaaactcgaatctgtact |
1047 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12814 |
agagatgaaactcgaatctgtact |
12837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 3282063 - 3282323
Alignment:
| Q |
18 |
gaaggttgtaggaagctcaagagttttccacccattcaattgacctctctggaactacttagactgtcatattgttataggcttaggaactttccagaaa |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3282063 |
gaaggttgtagtaatctcaagagttttccaccaattcaattgacatctcttgaactacttgaactttcatattgttataggcttaagaaatttccagaaa |
3282162 |
T |
|
| Q |
118 |
tattaggaaagatggaaaacctagaaagcannnnnnngaaagagacatccataaaagaattgcctaattcatttcaaaatctcatcgggcttcgaaattt |
217 |
Q |
| |
|
|||||| ||||||||||||| ||| | | | | |||| || |||||| | |||||||| ||||||||||||||||||| ||| ||| | | || |
|
|
| T |
3282163 |
tattagtaaagatggaaaacatagtaggaattgatttggaagaaacttccatagatgaattgccagattcatttcaaaatctcattgggattcaatactt |
3282262 |
T |
|
| Q |
218 |
actcttagatggatttagaatgtttcttaggttaccaagtagcattctcgtgatgccaaaa |
278 |
Q |
| |
|
| | |||||||| | |||| ||||||||||| ||| |||||| |||| ||||||||||| |
|
|
| T |
3282263 |
aatactagatggacatggaatttttcttaggtttccatgtagcactctcatgatgccaaaa |
3282323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 313 - 492
Target Start/End: Original strand, 3282316 - 3282495
Alignment:
| Q |
313 |
tgccaaaacaatgtgataaaccaagttccatggtgtcctcaaatgtaaaatctcttgtgctaatagaatgcaacctaacaggtgaatctcttccaataat |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||| || | ||||||||| | | || |||||||||| |||||||||||||||| | |
|
|
| T |
3282316 |
tgccaaaacaaagtgataaaccaagttccatgttgtcctcaaatgtacaagttattgtgctaacaaattgtaacctaacagatgaatctcttccaatagt |
3282415 |
T |
|
| Q |
413 |
ttttaagtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaagaac |
492 |
Q |
| |
|
| | | ||||||| ||||||||||| ||||| |||||||||| | |||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
3282416 |
tctgaggtggtttactaatgtgacatatttacacttatcaaagaataatttcacaattcttccagaatgcatcgaagaac |
3282495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 713 - 851
Target Start/End: Original strand, 46521 - 46659
Alignment:
| Q |
713 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
812 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| | ||| |||| ||||| ||| ||||||||||| ||||||||||| ||||||| ||||| |||||| |
|
|
| T |
46521 |
taacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaattt |
46620 |
T |
|
| Q |
813 |
ctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
46621 |
ctttttggtttcgtaacaagctcccttccatggctctct |
46659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 767 - 851
Target Start/End: Original strand, 39597 - 39681
Alignment:
| Q |
767 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
851 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| |||||||||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
39597 |
aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
39681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 39224 - 39319
Alignment:
| Q |
395 |
tgaatctcttccaataatttttaagtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccggaatgcatcaaaga |
490 |
Q |
| |
|
||||| ||||||||||||| | | ||||| |||||||||| |||| ||| || ||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
39224 |
tgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattcttccagaatgcatcaaaga |
39319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 379 - 490
Target Start/End: Complemental strand, 55741 - 55630
Alignment:
| Q |
379 |
aatgcaacctaacaggtgaatctcttccaataatttttaagtggtttgctaatgtgacaaatttaaacttatcaaaaagtaatatcacaattcttccgga |
478 |
Q |
| |
|
|||||||| || ||| | ||| |||||||||| || | | ||||| ||||||||||| || |||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
55741 |
aatgcaacttatcagataaatttcttccaatacttgtcatgtggtctgctaatgtgaaaactttagacctatcaggaaataatttcacaattcttccgga |
55642 |
T |
|
| Q |
479 |
atgcatcaaaga |
490 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
55641 |
atgcatgaaaga |
55630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 852
Target Start/End: Complemental strand, 55355 - 55270
Alignment:
| Q |
767 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctctt |
852 |
Q |
| |
|
|||||||||||||||||||| || |||| || ||||| | |||||||| ||||||||| ||| | ||||||||| |||||||| |
|
|
| T |
55355 |
aggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctt |
55270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 768 - 826
Target Start/End: Original strand, 16319 - 16377
Alignment:
| Q |
768 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
826 |
Q |
| |
|
|||| ||||| |||||||| || ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16319 |
ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt |
16377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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