View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_21 (Length: 353)
Name: NF19060_low_21
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 35381646 - 35381324
Alignment:
| Q |
14 |
aatattacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35381646 |
aatactacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
35381547 |
T |
|
| Q |
114 |
agaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
213 |
Q |
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| T |
35381546 |
aaaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
35381447 |
T |
|
| Q |
214 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35381446 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaat |
35381347 |
T |
|
| Q |
314 |
tgatagatggaactaagagtagt |
336 |
Q |
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||||||||||||||||| ||||| |
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| T |
35381346 |
tgatagatggaactaagtgtagt |
35381324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 120 - 325
Target Start/End: Complemental strand, 35370973 - 35370768
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
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|||||||| |||| |||||||||| |||||||||||| |||||||||| ||||| | |||||||||||| ||||| ||||||| || |||||| ||||| |
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| T |
35370973 |
atacttgtcttttaaatcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcat |
35370874 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
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||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35370873 |
aagcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
35370774 |
T |
|
| Q |
320 |
atggaa |
325 |
Q |
| |
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|||||| |
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| T |
35370773 |
atggaa |
35370768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 43 - 318
Target Start/End: Complemental strand, 35355608 - 35355328
Alignment:
| Q |
43 |
atattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaa--tgataaatga-aagag--agagaaaaatacttgtgttttgaatc |
137 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| | | |||||| |||| ||| |||||||| |||||||| |||| |
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| T |
35355608 |
atattacattggtaatcactaaatcattctccaaggagaaaacaaaatctgaaaaatcacaaatgagaagaagaagaaaaaaatacctgtgttttaaatc |
35355509 |
T |
|
| Q |
138 |
ttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacattgt |
237 |
Q |
| |
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|||||| || ||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| || |||||| || ||||||||| || ||||||| |
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| T |
35355508 |
ttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcatagagaacattgt |
35355409 |
T |
|
| Q |
238 |
aaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgata |
318 |
Q |
| |
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||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| |
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| T |
35355408 |
aaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgata |
35355328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 325
Target Start/End: Complemental strand, 19685518 - 19685313
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| || | ||||||||| ||||| | ||| |||||||| ||||| |||| || ||||||||| |||| |
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| T |
19685518 |
atacttgtgttttaaatcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaa |
19685419 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| || |
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| T |
19685418 |
aagcatagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaag |
19685319 |
T |
|
| Q |
320 |
atggaa |
325 |
Q |
| |
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|||||| |
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| T |
19685318 |
atggaa |
19685313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 19629133 - 19629334
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||| || | ||||||||| ||||| ||| |||||||| |||| ||| | | ||||||||| |||| |
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| T |
19629133 |
atacttgtattttaaatcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcac |
19629232 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||| |||| |||| || |
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| T |
19629233 |
aagcatagagcacaatgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaag |
19629332 |
T |
|
| Q |
320 |
at |
321 |
Q |
| |
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|| |
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|
| T |
19629333 |
at |
19629334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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