View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_low_22 (Length: 314)

Name: NF19060_low_22
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_low_22
NF19060_low_22
[»] chr8 (1 HSPs)
chr8 (19-314)||(10987853-10988148)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 10987853 - 10988148
Alignment:
Q  19 ggcaccgcgtacctgaagttgatcaaatagctatttcgtgctataggtgattgacaacactataatttctgagttatgcatgacacatggagaactagga 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10987853 ggcaccgcgtacctgaagttgatcacatagctatttcgtgctataggtgattgacaacactataatttctgagttatgcatgacacatggagaactagga 10987952  T
Q  119 tggatctttagcatgtcaacgtcattatatttcttacacactaacacacttctaactatttggctacactataaagaataaagtttcgatatttcatttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10987953 tggatctttagcatgtcaacgtcattatatttcttacacactaacacacttctaactatttggctacactataaagaataaagtttcgatatttcatttt 10988052  T
Q  219 ctaataagctgtttagatcagggaagtatgctgatggaatatgtgaagttttattactttttgtttcataatgaatcctttatgaagcgatagttt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10988053 ctaataagctgtttagatcagggaagtatgctgatggaatatgtgaagttttattactttttgtttcataatgaatcctttatgaagcgatagttt 10988148  T

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