View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_low_24 (Length: 292)

Name: NF19060_low_24
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_low_24
NF19060_low_24
[»] chr6 (2 HSPs)
chr6 (19-274)||(28178341-28178596)
chr6 (79-139)||(32930046-32930106)
[»] chr4 (5 HSPs)
chr4 (84-200)||(29437839-29437955)
chr4 (80-145)||(26160286-26160351)
chr4 (79-145)||(12028465-12028531)
chr4 (84-212)||(19602181-19602309)
chr4 (88-141)||(13066207-13066260)
[»] chr7 (5 HSPs)
chr7 (84-200)||(4829245-4829361)
chr7 (21-74)||(5312286-5312340)
chr7 (79-145)||(5636678-5636744)
chr7 (84-221)||(24596577-24596714)
chr7 (21-69)||(4091995-4092043)
[»] scaffold1149 (1 HSPs)
scaffold1149 (181-220)||(2203-2242)
[»] chr2 (2 HSPs)
chr2 (84-118)||(27917604-27917638)
chr2 (84-145)||(39732130-39732191)
[»] scaffold0065 (1 HSPs)
scaffold0065 (84-145)||(12749-12810)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 28178596 - 28178341
Alignment:
Q  19 gaaaaaacatacctagagagaataagaggaggatgtagatcttttgccttgaaacttctaattgtcttgtaccactagctttctgaatgaataaaatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28178596 gaaaaaacatacctagagagaataagaggaggatgtagatcttttgccttgaaacttctaattatcttgtaccactagctttctgaatgaataaaatagt 28178497  T
Q  119 cggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggttttccaacaaaaacgacttgaaagttaagcaaacaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28178496 cggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggttttccaacaaaaacgacttgagagttaagcaaacaaca 28178397  T
Q  219 cttcctagctgtttccatgcacggggcgcatggtaccgtgcacaggggtgcatggt 274  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28178396 cttcctagctgtttccatgcacggggcgcatggtacggtgcacaggggtgcatggt 28178341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 32930046 - 32930106
Alignment:
Q  79 attgtcttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttata 139  Q
    ||||||||||||| ||||||||||||||||||||||  ||  ||||||| || ||||||||    
T  32930046 attgtcttgtaccgctagctttctgaatgaataaaagtgtatgcaagagtctctatttata 32930106  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 29437955 - 29437839
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 183  Q
    ||||||||||||| |||||||||||||| || |||  ||||||| || |||||||||||||||  ||| ||||| ||||   ||||||||| ||| ||||    
T  29437955 cttgtaccactagttttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt 29437856  T
Q  184 ccaacaaaaacgacttg 200  Q
    ||| |||||||| ||||    
T  29437855 ccaccaaaaacggcttg 29437839  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 26160351 - 26160286
Alignment:
Q  80 ttgtcttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcat 145  Q
    |||||||||||| |||||||||||||||||||||| |||  ||||||| || ||||||||| ||||    
T  26160351 ttgtcttgtaccgctagctttctgaatgaataaaagagtgtgcaagagtctctatttatagggcat 26160286  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 12028465 - 12028531
Alignment:
Q  79 attgtcttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcat 145  Q
    ||||||||||||  ||| |||||||||||||||||| |||  ||||||| || ||||||||||||||    
T  12028465 attgtcttgtactgctaactttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcat 12028531  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 19602309 - 19602181
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 183  Q
    |||||||| ||||||||||||||||| |||| |||   |||| | || |||||||| ||||||  ||| | ||| ||||   ||||||||| ||||||||    
T  19602309 cttgtaccgctagctttctgaatgaaaaaaagagtgtacaagggtctctatttataatgcatgattacttcggggttaagagagtgaaaataggggtttt 19602210  T
Q  184 ccaacaaaaacgacttgaaagttaagcaa 212  Q
    ||| |||||| |  |||||| ||||||||    
T  19602209 ccaccaaaaatggtttgaaaattaagcaa 19602181  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 13066260 - 13066207
Alignment:
Q  88 taccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagt 141  Q
    |||| ||| ||||||||||||||||||||||  ||||||| || ||||||||||    
T  13066260 taccgctaactttctgaatgaataaaatagtacgcaagagtctctatttatagt 13066207  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 4829361 - 4829245
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 183  Q
    |||||||| |||||||||| ||||||||||||| |  ||| ||| || |||| |||||| ||| |||| ||||| ||||   ||||||||| | | ||||    
T  4829361 cttgtaccgctagctttctaaatgaataaaataatgtgcatgagtctctattcatagtggatgactacttaggggttaagagagtgaaaatagagttttt 4829262  T
Q  184 ccaacaaaaacgacttg 200  Q
    ||| ||||||| |||||    
T  4829261 ccaccaaaaacaacttg 4829245  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 5312286 - 5312340
Alignment:
Q  21 aaaaacatacc-tagagagaataagaggaggatgtagatcttttgccttgaaact 74  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| | ||||||||||    
T  5312286 aaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaact 5312340  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 5636744 - 5636678
Alignment:
Q  79 attgtcttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcat 145  Q
    |||| ||||||| |||||||||||||||||||||||  ||  ||||| | || ||||||||||||||    
T  5636744 attgccttgtactactagctttctgaatgaataaaagtgtgtgcaagggtctctatttatagtgcat 5636678  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 24596577 - 24596714
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 183  Q
    |||||||||  |||||||||||||||||||| |||  ||||  | || |||||||| ||||||  || ||| || ||||   ||||||||| || |||||    
T  24596577 cttgtaccatcagctttctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaaaataggagtttt 24596676  T
Q  184 ccaacaaaaacgacttgaaagttaagcaaacaacactt 221  Q
    ||| |||||| | |||| ||   |||||||||||||||    
T  24596677 ccaccaaaaatggcttggaaaacaagcaaacaacactt 24596714  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 4091995 - 4092043
Alignment:
Q  21 aaaaacatacctagagagaataagaggaggatgtagatcttttgccttg 69  Q
    |||||||||||||||||||| ||||||| |||| ||||| | |||||||    
T  4091995 aaaaacatacctagagagaacaagaggaagatggagatcctctgccttg 4092043  T

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Target: scaffold1149 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 2242 - 2203
Alignment:
Q  181 tttccaacaaaaacgacttgaaagttaagcaaacaacact 220  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  2242 tttccaacaaaaatgacttgaaaattaagcaaacaacact 2203  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 27917604 - 27917638
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagt 118  Q
    |||||||| ||||||||||||||||||||||||||    
T  27917604 cttgtaccgctagctttctgaatgaataaaatagt 27917638  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 39732191 - 39732130
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcat 145  Q
    |||||||| ||||||||||||||||||||||  ||  | ||||| || ||||||||||||||    
T  39732191 cttgtaccgctagctttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcat 39732130  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 12810 - 12749
Alignment:
Q  84 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcat 145  Q
    |||||||| ||||||||||||||||||||| | ||  ||||| | || ||||||||||||||    
T  12810 cttgtaccgctagctttctgaatgaataaactggtgtgcaagggtctctatttatagtgcat 12749  T

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