View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_25 (Length: 289)
Name: NF19060_low_25
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 4654730 - 4654977
Alignment:
| Q |
27 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcannnnnnnnnacaatattgg |
126 |
Q |
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| T |
4654730 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcatttttttttacaatattgg |
4654829 |
T |
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| Q |
127 |
agtgacatatttatttatttcacagttcacacatatttnnnnnnnnctatgactaaaaagaaaaattataattttatcaaactaaacannnnnnnnnnna |
226 |
Q |
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| T |
4654830 |
agtgacatatttatttatttcacagttcacacatattt-agaaaaactatgact-aaaagaaaaattataattttatcaaactaaacatttttttttgta |
4654927 |
T |
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| Q |
227 |
agtaacgtaagtggctgaagttcacatattttaaatgttgatgcacaggttc |
278 |
Q |
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| T |
4654928 |
agtaacat-ggtggctgaagttcacat-ttttaaatgttgatgtacaggttc |
4654977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 4674521 - 4674601
Alignment:
| Q |
27 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttca |
107 |
Q |
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| T |
4674521 |
ataattgtggataggaaaacactcatttctttttactaactgaaaatcatacgaaggaaataaaaatactaatgcacttca |
4674601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 4795057 - 4795127
Alignment:
| Q |
27 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaat |
99 |
Q |
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| T |
4795057 |
ataatcgtggataggaaaacactaatt--tttttattaatgaaaaaccatacgaaggaaatagaaatactaat |
4795127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 15028957 - 15028985
Alignment:
| Q |
236 |
agtggctgaagttcacatattttaaatgt |
264 |
Q |
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| T |
15028957 |
agtggctgaagttcacatattttaaatgt |
15028985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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