View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_26 (Length: 288)
Name: NF19060_low_26
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 40844067 - 40844337
Alignment:
| Q |
1 |
ttactgtcttcatgttcaacaatgtctctatgtcagagaagtcctgacaatgaccgaaacctccctcacatttctttctaatgtcgtagtactgcagttg |
100 |
Q |
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| T |
40844067 |
ttactgtcttcatgttcaacaatgtctctatgtcagagaagtcctgacaatgaccgaaagctccctcacatttctttctaatgtcgtagtactgcagttg |
40844166 |
T |
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| Q |
101 |
gaataacataatggattagtgtattcaaacttcattattttcatacaatctttaccttatacttttagtgctacttttcgtttttgacaacatacattag |
200 |
Q |
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| T |
40844167 |
gaataacataatgcattagtgtattcaaacttcattattttcatacaatctttaccttatacttttagtgctacttttcttttttgacaacatacattag |
40844266 |
T |
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| Q |
201 |
tgttgccggtgatgtttgtgatctgatagaatattttcatacaagtagttaatgcagtcccacatgcatgt |
271 |
Q |
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| T |
40844267 |
tgttgccggtgatgtttgtgatctgatagaatattttcatacaagtagttaatgcagtcccgcatgcatgt |
40844337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 269
Target Start/End: Original strand, 40839683 - 40839892
Alignment:
| Q |
61 |
ctccctcacatttctttctaatgtcgtagtactgcagttggaataacataatggattagtgtattcaaacttcattattttcatacaatctttaccttat |
160 |
Q |
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| T |
40839683 |
ctccctcacatttctttctgatgtcgtagcactgcagtttgaataacataatgcattagtgtattcaaacttcattattttcatacaatctttaccttat |
40839782 |
T |
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| Q |
161 |
acttttagtgctacttttcgttttt-gacaacatacattagtgttgccggtgatgtttgtgatctgatagaatattttcatacaagtagttaatgcagtc |
259 |
Q |
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| T |
40839783 |
acttttagtgctaattttcttttttcgacagcatacattaacgttgtcggtgttgtttatgatctgaataaatatgttcatacaaatacttaatgaagtc |
40839882 |
T |
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| Q |
260 |
ccacatgcat |
269 |
Q |
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| T |
40839883 |
acgcatgcat |
40839892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 40850236 - 40850381
Alignment:
| Q |
62 |
tccctcacatttctttctaatgtcgtagtactgcagttggaat-aacataatggattagtgtattcaaacttcattattttcatacaatctttaccttat |
160 |
Q |
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| T |
40850236 |
tccctcacattgctttctaatgtcatagtactgcattaggaataaacataatgcattagtgaatcgaaacaacataattatcatacaatctttgtcaaat |
40850335 |
T |
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| Q |
161 |
acttttagtgctacttttcgtttttgacaacatacattagtgttgccgg |
209 |
Q |
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| T |
40850336 |
acttttag---ttcttttcttttttgatatcatacattaatgttgccgg |
40850381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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