View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_low_27 (Length: 262)

Name: NF19060_low_27
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_low_27
NF19060_low_27
[»] chr1 (6 HSPs)
chr1 (18-257)||(9166113-9166349)
chr1 (18-252)||(9162948-9163180)
chr1 (65-136)||(29730929-29731001)
chr1 (71-207)||(3150631-3150768)
chr1 (81-172)||(32543928-32544020)
chr1 (60-206)||(31820583-31820725)
[»] chr3 (8 HSPs)
chr3 (81-196)||(54362021-54362136)
chr3 (81-172)||(20354703-20354795)
chr3 (60-172)||(37311658-37311771)
chr3 (65-176)||(34408044-34408154)
chr3 (116-176)||(9762748-9762808)
chr3 (81-143)||(24348710-24348772)
chr3 (71-172)||(43271659-43271761)
chr3 (59-111)||(42791077-42791128)
[»] chr6 (3 HSPs)
chr6 (59-207)||(7509671-7509820)
chr6 (71-154)||(5051569-5051653)
chr6 (77-140)||(11109110-11109171)
[»] chr2 (10 HSPs)
chr2 (77-196)||(929016-929135)
chr2 (81-202)||(3903683-3903803)
chr2 (77-196)||(34504167-34504288)
chr2 (59-167)||(2080543-2080651)
chr2 (90-210)||(15215479-15215600)
chr2 (64-144)||(37624326-37624406)
chr2 (65-111)||(2788500-2788546)
chr2 (77-146)||(41464116-41464186)
chr2 (65-172)||(16400617-16400726)
chr2 (59-111)||(44966038-44966090)
[»] chr5 (5 HSPs)
chr5 (65-202)||(30872982-30873120)
chr5 (66-146)||(141351-141432)
chr5 (81-172)||(29429624-29429716)
chr5 (71-204)||(36187498-36187632)
chr5 (81-202)||(30784272-30784395)
[»] chr4 (14 HSPs)
chr4 (65-160)||(3527906-3528003)
chr4 (78-172)||(39890849-39890943)
chr4 (81-172)||(23241026-23241118)
chr4 (65-196)||(40227586-40227715)
chr4 (60-202)||(2554102-2554244)
chr4 (81-172)||(13529363-13529455)
chr4 (116-171)||(13902029-13902084)
chr4 (126-204)||(18873510-18873588)
chr4 (117-175)||(48546332-48546390)
chr4 (71-172)||(50685607-50685709)
chr4 (65-141)||(8488651-8488728)
chr4 (60-141)||(14112213-14112294)
chr4 (83-167)||(19904503-19904588)
chr4 (65-113)||(2549062-2549110)
[»] chr7 (11 HSPs)
chr7 (60-204)||(17503552-17503696)
chr7 (60-204)||(17549518-17549662)
chr7 (60-146)||(42121360-42121447)
chr7 (77-202)||(32854239-32854365)
chr7 (71-172)||(37708489-37708591)
chr7 (77-141)||(26715111-26715175)
chr7 (73-160)||(37006658-37006747)
chr7 (81-172)||(9658339-9658431)
chr7 (59-111)||(37828411-37828463)
chr7 (71-171)||(33645213-33645313)
chr7 (87-146)||(18026039-18026099)
[»] chr8 (2 HSPs)
chr8 (81-160)||(42486555-42486635)
chr8 (81-166)||(1914586-1914673)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 9166349 - 9166113
Alignment:
Q  18 ataacttgtgtcctaataactcctaagaacacattataataaaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaa 117  Q
    |||||||||||||||||   ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9166349 ataacttgtgtcctaat---tcctaaggacacattataataaaactaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttaaa 9166253  T
Q  118 aatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgagttttaaaggcacaagttagtattttccttttaacaatta 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9166252 aatcaaattcaaatgcattgattataacacaacatttctacttgtgactcattaatttgagttttaaaggcacaagttagtattttccttttaacaatta 9166153  T
Q  218 gctagttcaactctttaaagtgatatttatctctgctcct 257  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  9166152 gctagttcaactctttaaagtgatatttatttctgttcct 9166113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 9163180 - 9162948
Alignment:
Q  18 ataacttgtgtcctaataactcctaagaacacattataataaaaccaaaaaggagaaacattctcttaaatttt-gtgcattcagttaattaaaagttca 116  Q
    ||||||||||||   |||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||| |    
T  9163180 ataacttgtgtc---ataacttctaaggacacatgataataaaaccaaaaaggagaaacattttcttaaatttttgtgcattcaatttatcaaaagttaa 9163084  T
Q  117 aaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgagttttaaaggcacaagttagtattttccttttaacaatt 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9163083 aaatcaaattcaaatgcattgattataacacaacatttctacttgtgactcattaatttgagttttaaaggtacaagttagtaatttccttttaacaatt 9162984  T
Q  217 agctagttcaactctttaaagtgatatttatctctg 252  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9162983 agctagttcaactctttaaagtgatatttatttctg 9162948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 29730929 - 29731001
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcatt 136  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||||||   ||||| |||||||||||||||    
T  29730929 aaaagtagaaacattctcttaaattttatgtattcaattaattaaaagtaaaaaaattaaattcaaatgcatt 29731001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 3150768 - 3150631
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    |||||||||| ||| ||||||||||||||| ||||| |||||| | ||||| ||||||||||| ||| |||| |||| |  ||||| |||| |||||  |    
T  3150768 agaaacattcccttgaattttgtgcattcaattaataaaaagtataaaaattaaattcaaatgtattaattacaacaaattatttccacttttgacttgt 3150669  T
Q  170 taatttgagttttaaaggcacaagttagtattttcctt 207  Q
    ||| ||| || ||||  ||||| ||||  |||||||||    
T  3150668 taacttgtgtcttaagagcacaggttaacattttcctt 3150631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 32543928 - 32544020
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    |||| ||||||||||||||| ||||||||||||   ||||| ||||| || |||||| ||||||||| || |||| ||||| |||| ||||||    
T  32543928 tcttcaattttgtgcattcaattaattaaaagtaaaaaaattaaattaaattgcattaattataacaaaatatttatacttttgacacattaa 32544020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 31820583 - 31820725
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctact 159  Q
    |||| ||||| ||||||||| | |||||||||||||| | | |||||||||| |  |||   |||||||||||| ||||||| |||| |  ||||| |||    
T  31820583 aacctaaaagtagaaacattattttaaattttgtgcacttaattaattaaaaatgaaaa---aaattcaaatgc-ttgattacaacaaattatttccact 31820678  T
Q  160 tgtgactcattaatttgagttttaaaggcacaagttagtattttcct 206  Q
    | ||||| ||||| ||| |  |||| |||||||||||  ||||||||    
T  31820679 tttgacttattaacttgcgccttaagggcacaagttaacattttcct 31820725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 54362136 - 54362021
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgagtt 180  Q
    |||||||||||||||||||| ||||||||||    ||||| |||||||||||||||||||| |||  || |||||||||| ||||||||||| ||| |      
T  54362136 tcttaaattttgtgcattcaattaattaaaataaaaaaattaaattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtgcc 54362037  T
Q  181 ttaaaggcacaagtta 196  Q
    |||| |||||||||||    
T  54362036 ttaagggcacaagtta 54362021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 20354795 - 20354703
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagtt-caaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    |||||||||||||| ||||| ||||||||||||  |||||| ||||||||||||||| |||| || | || |||||||||| ||||| |||||    
T  20354795 tcttaaattttgtgtattcaattaattaaaagtaacaaaattaaattcaaatgcattaattacaataaaatatttctacttttgactgattaa 20354703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 37311771 - 37311658
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctac 158  Q
    |||| ||||| ||||||||||||||  |||||||||||||| ||||| ||||||   ||||| ||||||||||||||| |||| |||| |  |||| |||    
T  37311771 aacccaaaagtagaaacattctcttgtattttgtgcattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaacaaattatttatac 37311672  T
Q  159 ttgtgactcattaa 172  Q
    || || ||||||||    
T  37311671 ttttgtctcattaa 37311658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 34408154 - 34408044
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctacttgtga 164  Q
    ||||| |||||||||||||||||||| || || | | ||||||||||||  | ||| ||||| |||||||||||||| |||| |  ||||| |||| |||    
T  34408154 aaaagtagaaacattctcttaaattt-gtccacttaattaattaaaagtaaacaattaaatttaaatgcattgattacaacaaattatttccacttttga 34408056  T
Q  165 ctcattaatttg 176  Q
     |||||||||||    
T  34408055 atcattaatttg 34408044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 9762748 - 9762808
Alignment:
Q  116 aaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttg 176  Q
    ||||| ||||||||||||||| |||| || | || |||||||||| |||||||||||||||    
T  9762748 aaaattaaattcaaatgcattaattacaataaaatatttctacttttgactcattaatttg 9762808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 24348710 - 24348772
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattata 143  Q
    |||||||||||||||||||| ||||||||||    ||||| ||||| ||||||||| ||||||    
T  24348710 tcttaaattttgtgcattcaattaattaaaaacaaaaaattaaatttaaatgcattaattata 24348772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 43271761 - 43271659
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagttca-aaatcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    |||| |||| ||||||||||||| |||||| ||||| |||| |  | |||| ||||||||||||||| |||| |||| || ||||| |||| ||| ||||    
T  43271761 agaagcattatcttaaattttgtacattcaattaatcaaaaatgaataaattaaattcaaatgcatttattacaacagaatatttccacttttgattcat 43271662  T
Q  170 taa 172  Q
    |||    
T  43271661 taa 43271659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 42791077 - 42791128
Alignment:
Q  59 aaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaa 111  Q
    ||||||||||| ||||| ||||||| |||||||||||||||| || |||||||    
T  42791077 aaaccaaaaagaagaaatattctct-aaattttgtgcattcaattcattaaaa 42791128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 7509671 - 7509820
Alignment:
Q  59 aaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatc-aaattcaaatgcattgattataacataacatttcta 157  Q
    ||||| ||||| ||||||||  |||||||||||||||||||| ||||| |||| |  ||||   |||||||||||||||||||| |||| || |||||||    
T  7509671 aaacccaaaagtagaaacatgttcttaaattttgtgcattcaattaatcaaaaataaaaaaagtaaattcaaatgcattgattacaacacaatatttcta 7509770  T
Q  158 cttgtgactcattaatttgagttttaaaggcacaagttagtattttcctt 207  Q
    ||| ||||||||||| ||| |  |||| |||| ||||||| |||| ||||    
T  7509771 cttttgactcattaacttgtgccttaagggcaaaagttagcatttccctt 7509820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 5051569 - 5051653
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacattt 154  Q
    ||||| |||||||||||||||||||| | | ||||||||||||   ||||| ||||||||||||| || ||| ||||||| ||||    
T  5051569 agaaatattctcttaaattttgtgcacttaattaattaaaagtaaaaaaattaaattcaaatgcactgtttacaacataatattt 5051653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 11109110 - 11109171
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgatt 140  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||  |||||||||||| ||||||    
T  11109110 attctcttaaattttgtgtattcaattaattaaaagt--aaaaaaaaattcaaatgccttgatt 11109171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 929135 - 929016
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttg 176  Q
    ||||||||||| |||||||||||| ||  | ||||||  ||||| |||||||||||||||||||| |||| || |||||||||| |||||| |||| |||    
T  929135 attctcttaaactttgtgcattcaattcttcaaaagtaaaaaattaaattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttg 929036  T
Q  177 agttttaaaggcacaagtta 196  Q
     || |||| | |||||||||    
T  929035 tgtcttaaggacacaagtta 929016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 3903803 - 3903683
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgagt 179  Q
    |||||||||||||||||| ||||||||||||||   ||||| ||||||||||||||| |||| |||  || |||||||||| ||||||||||| ||| |     
T  3903803 tcttaaattttgtgcatttagttaattaaaagtaaaaaaattaaattcaaatgcattaattacaac--aatatttctacttctgactcattaacttgtgg 3903706  T
Q  180 tttaaaggcacaagttagtattt 202  Q
    |||||  ||||||||||| ||||    
T  3903705 tttaagagcacaagttagcattt 3903683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 34504288 - 34504167
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagt--tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatt 174  Q
    |||||||||||||||||||||||| ||||||||||||    ||||  |||||||||||||||||||  ||||    |||||||||| ||| ||||||| |    
T  34504288 attctcttaaattttgtgcattcaattaattaaaagtaaaaaaaactaaattcaaatgcattgattgcaacaacttatttctacttttgattcattaact 34504189  T
Q  175 tgagttttaaaggcacaagtta 196  Q
    || || |||| |||||||||||    
T  34504188 tgtgtcttaagggcacaagtta 34504167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 2080543 - 2080651
Alignment:
Q  59 aaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctac 158  Q
    ||||| ||||| | ||| |||||||||||||||||||||||| ||||  ||||||  || || |||||||||||||||||||| || | || |||| |||    
T  2080543 aaacccaaaagcaaaaatattctcttaaattttgtgcattcaattaaacaaaagtaaaatattaaattcaaatgcattgattacaaaacaatatttatac 2080642  T
Q  159 ttgtgactc 167  Q
    || ||||||    
T  2080643 ttttgactc 2080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 15215600 - 15215479
Alignment:
Q  90 ttgtgcattcagttaattaaaagttc-aaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgagttttaaaggc 188  Q
    ||||||||||| ||||| ||||||   ||||| ||||||||||||||| |||  ||||  | |||||||||| ||||||||||| ||  |||||||  ||    
T  15215600 ttgtgcattcaattaataaaaagtaataaaattaaattcaaatgcattaatttcaacaatatatttctacttttgactcattaacttatgttttaagagc 15215501  T
Q  189 acaagttagtattttcctttta 210  Q
    | ||||||  ||||||||||||    
T  15215500 ataagttaacattttcctttta 15215479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 37624406 - 37624326
Alignment:
Q  64 aaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataa 144  Q
    |||||| ||||||||  ||||| |||||||| ||||| ||||| |||| |  ||||| |||||||||| ||||||||||||    
T  37624406 aaaaagtagaaacatcttcttagattttgtgtattcaattaatcaaaaataaaaaattaaattcaaatacattgattataa 37624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 2788546 - 2788500
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaa 111  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||    
T  2788546 aaaagtagaaacattctattaaagtttgtgcattcaattaattaaaa 2788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 41464116 - 41464186
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagttcaa-aatcaaattcaaatgcattgattataaca 146  Q
    |||||||| ||||||||||||||| ||||| ||||||| || ||| ||||| ||||||||| |||| ||||    
T  41464116 attctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattgaaatgcattaattacaaca 41464186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 16400726 - 16400617
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaa-tcaaattcaaatgcattgattata-acataacatttctacttgt 162  Q
    ||||| |||||| ||||||||||||||  || |||| ||||| | ||||  |||| | ||||||||||||||||| |||| ||| || |||| ||||| |    
T  16400726 aaaagtagaaacgttctcttaaattttacgctttcaattaatcataagtaaaaaaattaaattcaaatgcattgactatacacaaaatatttatactttt 16400627  T
Q  163 gactcattaa 172  Q
    ||||||||||    
T  16400626 gactcattaa 16400617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 44966038 - 44966090
Alignment:
Q  59 aaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaa 111  Q
    ||||| ||||| ||||| ||||||| |||||||||||||||| || |||||||    
T  44966038 aaacccaaaagaagaaatattctctaaaattttgtgcattcaattcattaaaa 44966090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 30872982 - 30873120
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtg 163  Q
    ||||| ||||||||| ||||||||| | |||||||||||||||||||||   ||||| |||||||||| |||| ||||||||| || |  | ||||  ||    
T  30872982 aaaagtagaaacattttcttaaattgtatgcattcagttaattaaaagtaaaaaaattaaattcaaatacattaattataacaaaaaaaatttactcttg 30873081  T
Q  164 actcattaatttgagttttaaaggcacaagttagtattt 202  Q
    ||||||||| ||| |  |||| |||||||||||| ||||    
T  30873082 actcattaacttgtgccttaagggcacaagttagcattt 30873120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 141432 - 141351
Alignment:
Q  66 aaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaa-aatcaaattcaaatgcattgattataaca 146  Q
    |||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||| ||||||||||||||| |||| ||||    
T  141432 aaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattcaaatgcattaattacaaca 141351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 29429716 - 29429624
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagtt-caaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    |||||||||||||||||| | |||||||||||||  ||||| ||||||||||| ||| |||| |||| || ||||| |||| |||||| ||||    
T  29429716 tcttaaattttgtgcatttaattaattaaaagttggaaaattaaattcaaatgtattaattacaacaaaatatttccacttttgactctttaa 29429624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 36187632 - 36187498
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaa-tcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    ||||||||| ||||||| |||||  || || ||||| ||||||  |||| | |||| |||||||||| |||| |||| || |||| ||||| | | ||||    
T  36187632 agaaacattttcttaaactttgtatatgcaattaatcaaaagtaaaaaaattaaatacaaatgcattaattacaacaaaatatttttacttttaattcat 36187533  T
Q  170 taatttgagttttaaaggcacaagttagtattttc 204  Q
    ||| |||  | ||||||||||||||||| ||||||    
T  36187532 taacttgtatcttaaaggcacaagttagcattttc 36187498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 30784272 - 30784395
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagt--tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaatttgag 178  Q
    ||||||||||| |||||||| ||||||||||||    ||||| |||||||||| |||| |||| |||| || |||| ||||| | ||| | ||| ||| |    
T  30784272 tcttaaattttatgcattcaattaattaaaagtaaaaaaaattaaattcaaatacattaattacaacaaaatatttttacttttaacttaataacttgtg 30784371  T
Q  179 ttttaaaggcacaagttagtattt 202  Q
    |||||| ||  |||||||| ||||    
T  30784372 ttttaagggtgcaagttagaattt 30784395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 3528003 - 3527906
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttca--aaatcaaattcaaatgcattgattataacataacatttctactt 160  Q
    ||||| ||||||||||||||| |||||||||||||| ||||| |||| |  |  |||| |||||||||||||||||||| |||| || ||||||||||    
T  3528003 aaaagtagaaacattctcttatattttgtgcattcaattaatcaaaaataaaataaattaaattcaaatgcattgattacaacaaaatatttctactt 3527906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 39890943 - 39890849
Alignment:
Q  78 ttctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    |||| ||||||||||| |||||| ||||| ||||||  ||||| ||||||| ||||||||||||||||| |  ||||||| || |||||||||||    
T  39890943 ttctattaaattttgtacattcaattaataaaaagtaaaaaattaaattcatatgcattgattataacacagtatttctatttttgactcattaa 39890849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 23241118 - 23241026
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    ||||||||||||||| |||| |||||||||||| | ||||| ||||||||||||||| ||| ||||| || |||| ||||| | |||||||||    
T  23241118 tcttaaattttgtgccttcaattaattaaaagtataaaaattaaattcaaatgcattaattgtaacaaaatatttttacttttaactcattaa 23241026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 40227586 - 40227715
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctacttgtga 164  Q
    ||||| |||||||||||||| ||||||||||||||| ||||| ||||||  ||||| |||||   |||| || |||| |||| |  ||||| |||| ||     
T  40227586 aaaagtagaaacattctcttgaattttgtgcattcaattaatcaaaagtaaaaaattaaatt--tatgcctttattacaacaaattatttccacttttgc 40227683  T
Q  165 ctcattaatttgagttttaaaggcacaagtta 196  Q
    |||||||| ||| | |||||||||||||||||    
T  40227684 ctcattaacttgtgctttaaaggcacaagtta 40227715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 2554102 - 2554244
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgattataacataacatttctact 159  Q
    |||| ||||| |||||  || ||||| || ||||||||||| ||||||||||||  ||| | ||||||||||||||| |||| ||   || ||||||| |    
T  2554102 aacccaaaagtagaaattttttcttacatgttgtgcattcaattaattaaaagtaaaaatttaaattcaaatgcattaattacaattaaatatttctatt 2554201  T
Q  160 tgtgactcattaatttgagttttaaaggcacaagttagtattt 202  Q
    | ||| ||||||| ||| |  |||| |||||||||||| ||||    
T  2554202 tttgattcattaacttgtgccttaagggcacaagttagcattt 2554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 13529455 - 13529363
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagttcaaaa-tcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    ||||||||||||| |||| | ||||| ||||||  |||| | ||||||||||||||| |||| |||| || |||| ||||| |||||||||||    
T  13529455 tcttaaattttgttcatttaattaatcaaaagtaaaaaaattaaattcaaatgcattaattacaacaaaaaatttatacttttgactcattaa 13529363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 13902084 - 13902029
Alignment:
Q  116 aaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcatta 171  Q
    ||||| |||||||||||||||||||| |||  || |||||||||| ||||||||||    
T  13902084 aaaattaaattcaaatgcattgattacaaccaaatatttctacttttgactcatta 13902029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 18873510 - 18873588
Alignment:
Q  126 tcaaatgcattgattataacataacatttctacttgtgactcattaatttgagttttaaaggcacaagttagtattttc 204  Q
    |||||||||||| ||  ||||  | |||||||||| |||||| |||||||| || |||| |||||||||||| ||||||    
T  18873510 tcaaatgcattgtttgcaacacgatatttctacttttgactcgttaatttgtgtcttaagggcacaagttagcattttc 18873588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 48546332 - 48546390
Alignment:
Q  117 aaatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaattt 175  Q
    |||| ||||||||||| ||| ||||||||| || |||||||||| | ||||||||||||    
T  48546332 aaattaaattcaaatgtatttattataacacaatatttctacttttaactcattaattt 48546390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 50685709 - 50685607
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    ||||| ||| |||| ||||||||||||||| ||||||||||||   ||||| |||||||||| |||| |||| |||| |  ||||| |||| || |||||    
T  50685709 agaaatattttcttgaattttgtgcattcaattaattaaaagtaaaaaaattaaattcaaatacatttattacaacaaattatttccacttttggctcat 50685610  T
Q  170 taa 172  Q
    |||    
T  50685609 taa 50685607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 8488651 - 8488728
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgatta 141  Q
    ||||| ||||||||||||||  |||||||| ||||| ||||| ||||||   ||||| ||||||||||||||| ||||    
T  8488651 aaaagtagaaacattctcttgtattttgtgtattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaatta 8488728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 14112213 - 14112294
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgatta 141  Q
    |||| ||||| ||||| |||||||||| |||| ||||||||  || | ||||||  ||||| ||||||||||| ||||||||    
T  14112213 aacccaaaagtagaaatattctcttaagttttatgcattcaactattcaaaagtaaaaaattaaattcaaatgtattgatta 14112294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 19904503 - 19904588
Alignment:
Q  83 ttaaattttgtgcattcagttaattaaaagttcaaaa-tcaaattcaaatgcattgattataacataacatttctacttgtgactc 167  Q
    |||||||||||||||||| ||||||||||||  |||| | ||||||||||| ||| |||| |||| || |||| ||| | ||||||    
T  19904503 ttaaattttgtgcattcaattaattaaaagtaaaaaatttaaattcaaatgaattaattaaaacaaaatatttttacgtttgactc 19904588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 2549110 - 2549062
Alignment:
Q  65 aaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt 113  Q
    ||||| |||||| || |||||||||||||||||| | ||||||||||||    
T  2549110 aaaagtagaaactttttcttaaattttgtgcatttaattaattaaaagt 2549062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 17503552 - 17503696
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctac 158  Q
    |||| |||| ||||||| || |||||||||||||||||||| ||||| ||||||   |||||  |||||||||||||| ||||||||| || |||||||     
T  17503552 aacctaaaatgagaaactttttcttaaattttgtgcattcaattaatgaaaagtaaaaaaattgaattcaaatgcattaattataacaaaatatttcta- 17503650  T
Q  159 ttgtgactcattaatttgagttttaaaggcacaagttagtattttc 204  Q
    || ||| ||||||| ||| || || | ||||||| |||| ||||||    
T  17503651 ttttgattcattaacttgtgtcttgagggcacaaattagcattttc 17503696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 17549662 - 17549518
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctac 158  Q
    |||| |||| ||||||| || |||||||||||||||||||| ||||| ||||||   |||||  |||||||||||||| ||||||||| || |||||||     
T  17549662 aacctaaaatgagaaactttttcttaaattttgtgcattcaattaatgaaaagtaaaaaaattgaattcaaatgcattaattataacaaaatatttcta- 17549564  T
Q  159 ttgtgactcattaatttgagttttaaaggcacaagttagtattttc 204  Q
    || ||| ||||||| ||| || || | ||||||| |||| ||||||    
T  17549563 ttttgattcattaacttgtgtcttgagggcacaaattagcattttc 17549518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 42121447 - 42121360
Alignment:
Q  60 aaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataaca 146  Q
    |||| ||||| ||||||||||||||||||||||| |||||| ||||| ||||||   ||||| ||||||||||||||| |||| ||||    
T  42121447 aacccaaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtgaaaaaattaaattcaaatgcattaattacaaca 42121360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 32854365 - 32854239
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagttcaa-aatcaaattcaaatgcattgattataacataacatttctacttgtgactcattaattt 175  Q
    |||||||||||||||||||| |   ||||||||||||  || ||| || ||||||||||||||||| |||| |  ||||| |||| | ||||||||| ||    
T  32854365 attctcttaaattttgtgcactttattaattaaaagtaaaataattaatttcaaatgcattgattagaacaaattatttccacttttaactcattaactt 32854266  T
Q  176 gagttttaaaggcacaagttagtattt 202  Q
    | ||||||| |||||| ||||| ||||    
T  32854265 gtgttttaagggcacaggttagcattt 32854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 37708489 - 37708591
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||   ||||| ||||||||||||||| |||| |||| | |||||  |||| || |||||    
T  37708489 agaaacattcccttaaattttgtgcattcaattaatcaaaagtaaaaaaattaaattcaaatgcatttattacaacaaatcattttcacttttggctcat 37708588  T
Q  170 taa 172  Q
    |||    
T  37708589 taa 37708591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 26715175 - 26715111
Alignment:
Q  77 attctcttaaattttgtgcattcagttaattaaaagttcaaaatcaaattcaaatgcattgatta 141  Q
    |||||||| ||||||||||||||| ||||| ||||||  ||||| ||||||||||||||| ||||    
T  26715175 attctcttgaattttgtgcattcaattaatcaaaagtgaaaaattaaattcaaatgcattaatta 26715111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 37006747 - 37006658
Alignment:
Q  73 aaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattc-aaatgcattgattataacataacatttctactt 160  Q
    ||||||| | |||||||||||||||| | ||||| ||||||  |||||| |||||| ||||||||| ||||||||| || ||||||||||    
T  37006747 aaacatttttttaaattttgtgcattaaattaatcaaaagtaacaaaattaaattcaaaatgcattaattataacaaaatatttctactt 37006658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 9658431 - 9658339
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagttcaaaa-tcaaattcaaatgcattgattataacataacatttctacttgtgactcattaa 172  Q
    ||||||||||||| |||| | ||||| ||||||  |||| | ||||||||||||||| |||| |||| || |||| ||||| |||||||||||    
T  9658431 tcttaaattttgttcatttaattaatcaaaagtaaaaaaattaaattcaaatgcattaattacaacaaaaaatttatacttttgactcattaa 9658339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 37828463 - 37828411
Alignment:
Q  59 aaaccaaaaaggagaaacattctcttaaattttgtgcattcagttaattaaaa 111  Q
    ||||| ||||| ||||| |||||||||||||||||||||||| || |||||||    
T  37828463 aaacctaaaagaagaaatattctcttaaattttgtgcattcaatttattaaaa 37828411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 33645213 - 33645313
Alignment:
Q  71 agaaacattctcttaaattttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgactcat 169  Q
    ||||||| ||| |||||||||||||| | | ||||||||||||   ||||| |||||||||||||||| ||| |||| |  ||||| |||| ||||||||    
T  33645213 agaaacaatcttttaaattttgtgcacttaattaattaaaagtaataaaattaaattcaaatgcattg-ttacaacaaattatttccacttttgactcat 33645311  T
Q  170 ta 171  Q
    ||    
T  33645312 ta 33645313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 18026099 - 18026039
Alignment:
Q  87 attttgtgcattcagttaattaaaagt-tcaaaatcaaattcaaatgcattgattataaca 146  Q
    |||||||||||||| ||||||||||||   ||||| ||||||||||||||| |||| ||||    
T  18026099 attttgtgcattcaattaattaaaagtaaaaaaattaaattcaaatgcattaattacaaca 18026039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 42486635 - 42486555
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagttcaa-aatcaaattcaaatgcattgattataacataacatttctactt 160  Q
    |||||||||||||||||||  ||||||||||||  || ||| ||||||||||||||| |||| |||| |||||||||||||    
T  42486635 tcttaaattttgtgcattctattaattaaaagtaaaagaattaaattcaaatgcattaattacaacaaaacatttctactt 42486555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 1914673 - 1914586
Alignment:
Q  81 tcttaaattttgtgcattcagttaattaaaagt--tcaaaatcaaattcaaatgcattgattataacataacatttctacttgtgact 166  Q
    |||||||||||||| ||||| ||||||||||||    ||||| ||||||| ||||||| |||| |||| || |||||||||| |||||    
T  1914673 tcttaaattttgtgtattcaattaattaaaagtaaaaaaaatgaaattcatatgcattaattagaacaaaatatttctacttttgact 1914586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University