View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_28 (Length: 260)
Name: NF19060_low_28
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 11251264 - 11251038
Alignment:
| Q |
11 |
ttattcttggcaaaatccgtaggaaacgggtttcctaaaaatttacactaaaccctgcaggtaagtccgcaggaaaatcgagagtttctataagaatcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11251264 |
ttattcttggcaaaatccgtaggaaacgggtttcctaagaatttacactaaaccctgcagataagtccgcaggaaaatcgagagtttctataagaatcaa |
11251165 |
T |
|
| Q |
111 |
aatcatgcgtaataaggactcaaggcaaagagagaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagaggaaagatgaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11251164 |
aatcatgcgtaataaggactcaaggcaaagagagaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagaggaaagatgaag |
11251065 |
T |
|
| Q |
211 |
aaaaaataatatatcagatggagatac |
237 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
11251064 |
aaaaaataatatatcagatggagatac |
11251038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 11294285 - 11294060
Alignment:
| Q |
11 |
ttattcttggcaaaatccgtaggaaacgggtttcctaaaaatttacactaaaccctgcaggtaagtccgcaggaaaatcgagagtttctataagaatcaa |
110 |
Q |
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||||||||||| ||||||||||||||| ||||||| | || |||||||||||||| | ||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
11294285 |
ttattcttggcgaaatccgtaggaaacaggtttccgagaa-tttacactaaaccccggaggtacatccgcaggaaaatcgagagtttctctaaggatcaa |
11294187 |
T |
|
| Q |
111 |
aatcatgcgtaataaggactcaaggcaaagagagaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagaggaaagatgaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11294186 |
aatcatgcgtaataaggactcaaggcaaagagagaatttttgacaaaacccaatattaatttctttgaaatatgaacccttgccaagaggaaagatgaag |
11294087 |
T |
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| Q |
211 |
aaaaaataatatatcagatggagatac |
237 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
11294086 |
aaaaaataatatatcagatggagatac |
11294060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11260871 - 11260986
Alignment:
| Q |
102 |
aagaatcaaaatcatgcgtaataaggactcaaggcaaagag-agaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagagg |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11260871 |
aagaatcaaaatcatgcgtaataaggagtcaaggcaaagaggataatttctgaggaaacccaatattaatttcgttgaaatatgaacccttgccaagagg |
11260970 |
T |
|
| Q |
201 |
aaagatgaagaaaaaa |
216 |
Q |
| |
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||||||||| |||||| |
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| T |
11260971 |
aaagatgaaaaaaaaa |
11260986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11253356 - 11253471
Alignment:
| Q |
102 |
aagaatcaaaatcatgcgtaataaggactcaaggcaaagag-agaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11253356 |
aagaatcaaaatcatgcgtaataaggagtcaaggcaaagaggataatttctgaggaaacccaatattaatttcgttgaaatatgaacccttgccaagagg |
11253455 |
T |
|
| Q |
201 |
aaagatgaagaaaaaa |
216 |
Q |
| |
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||||||| | |||||| |
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| T |
11253456 |
aaagatggaaaaaaaa |
11253471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11255860 - 11255975
Alignment:
| Q |
102 |
aagaatcaaaatcatgcgtaataaggactcaaggcaaagag-agaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11255860 |
aagaatcaaaatcatgcgtaataaggagtcaaggcaaagaggataatttctgaggaaacccaatattaatttcgttgaaatatgaacccttgccaagagg |
11255959 |
T |
|
| Q |
201 |
aaagatgaagaaaaaa |
216 |
Q |
| |
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||||||| | |||||| |
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| T |
11255960 |
aaagatggaaaaaaaa |
11255975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11258365 - 11258480
Alignment:
| Q |
102 |
aagaatcaaaatcatgcgtaataaggactcaaggcaaagag-agaatttttgaaaaaacccaatattaatttctttgaaatatgaacccttgccaagagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11258365 |
aagaatcaaaatcatgcgtaataaggagtcaaggcaaagaggataatttctgaggaaacccaatattaattttgttgaaatatgaacccttgccaagagg |
11258464 |
T |
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| Q |
201 |
aaagatgaagaaaaaa |
216 |
Q |
| |
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||||||||| |||||| |
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| T |
11258465 |
aaagatgaaaaaaaaa |
11258480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 28753436 - 28753402
Alignment:
| Q |
66 |
tgcaggtaagtccgcaggaaaatcgagagtttcta |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
28753436 |
tgcaggtaattccgcaggaaaatcgagagtttcta |
28753402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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