View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_low_29 (Length: 259)

Name: NF19060_low_29
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_low_29
NF19060_low_29
[»] scaffold0192 (2 HSPs)
scaffold0192 (98-239)||(19120-19262)
scaffold0192 (8-101)||(19584-19677)
[»] chr3 (4 HSPs)
chr3 (8-101)||(15993435-15993528)
chr3 (108-227)||(15993035-15993154)
chr3 (203-239)||(50719200-50719236)
chr3 (203-239)||(50793612-50793648)
[»] chr5 (3 HSPs)
chr5 (98-236)||(6702010-6702149)
chr5 (148-239)||(37340325-37340417)
chr5 (148-238)||(11298471-11298562)
[»] chr1 (2 HSPs)
chr1 (98-238)||(41862753-41862894)
chr1 (160-238)||(51382509-51382588)
[»] chr6 (5 HSPs)
chr6 (98-180)||(20910836-20910918)
chr6 (98-180)||(20925284-20925366)
chr6 (194-238)||(20910753-20910797)
chr6 (194-238)||(20925201-20925245)
chr6 (171-238)||(31661143-31661211)
[»] chr8 (3 HSPs)
chr8 (175-239)||(45239360-45239425)
chr8 (203-241)||(9885365-9885403)
chr8 (171-238)||(42319906-42319974)
[»] chr7 (1 HSPs)
chr7 (99-238)||(30063268-30063408)
[»] chr4 (2 HSPs)
chr4 (148-239)||(2304249-2304341)
chr4 (171-239)||(16030588-16030657)


Alignment Details
Target: scaffold0192 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 19262 - 19120
Alignment:
Q  98 gatatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattcc-aacataattcgttttattgtgaatcaattgttc 196  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||| || ||||||||||| || | || |||    
T  19262 gatatggtagctttcgtgactttgataaattttgtttatgtattctgactttttacattccattccaaacatattttgttttattgtgtattagttattc 19163  T
Q  197 cggctcatatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    ||||||||| || |||||||||||| || ||||||||||||||    
T  19162 cggctcataagacccgtgcggcgcacggatcggcgttctagtt 19120  T

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Target: scaffold0192; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 19677 - 19584
Alignment:
Q  8 tgagatgaactataacaggggagtgttagctgaagagcattcacgtttaatgccaacgatgatagatgagcaacaacaagtgtatgacaagata 101  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||    
T  19677 tgagatgaactataatagggtagtgttagctgaagagcattcacgtttaatatcaacgatgacagatgagtaacaacaagtgtatgacaagata 19584  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 15993528 - 15993435
Alignment:
Q  8 tgagatgaactataacaggggagtgttagctgaagagcattcacgtttaatgccaacgatgatagatgagcaacaacaagtgtatgacaagata 101  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  15993528 tgagatgaactataacaggggagtgttagatgaagagcattcatgtttaatgtcaacgatgacagatgagcaacaacaagtgtatgacaagata 15993435  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 15993154 - 15993035
Alignment:
Q  108 ctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttattgtgaatcaattgttccggctcatatg 207  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||| |||||| ||||| |    
T  15993154 ctttgctgactccgataaattttgtttatgtattctgactttttaaattccattccaacatatttccttttattgtgtatcaattattccggttcataag 15993055  T
Q  208 atccgtgcggcgcatgggtc 227  Q
    | |||||||||||| |||||    
T  15993054 acccgtgcggcgcacgggtc 15993035  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 50719200 - 50719236
Alignment:
Q  203 atatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    |||||| |||||||||||| |||||||||||||||||    
T  50719200 atatgacccgtgcggcgcacgggtcggcgttctagtt 50719236  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 50793648 - 50793612
Alignment:
Q  203 atatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    |||||| |||||||||||| |||||||||||||||||    
T  50793648 atatgacccgtgcggcgcacgggtcggcgttctagtt 50793612  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 6702010 - 6702149
Alignment:
Q  98 gatatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttattgtgaatc-aattgttc 196  Q
    |||| |||| ||||||||||| ||||||||||| ||| |||||| |||  |||||||||||||||||||||| |||||||||||||| ||| |||| |||    
T  6702010 gatacggtaactttggtgactccgataaattttatttgtgtattttgattttttaaattccattccaacatatttcgttttattgtgtatcaaattattc 6702109  T
Q  197 cggctcatatgatccgtgcggcgcatgggtcggcgttcta 236  Q
     |||||||| || |||||||| ||| ||||||||||||||    
T  6702110 tggctcataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 37340325 - 37340417
Alignment:
Q  148 ttttaaattccattccaacataattcgttttattgtgaatcaatt-gttccggctcatatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    ||||||||| |||||||  ||| ||| ||||||| || ||||||| ||||| ||| ||| || |||||||| ||| |||||||||||||||||    
T  37340325 ttttaaatttcattccactatatttcattttattatgtatcaatttgttccagctaataagacccgtgcggggcacgggtcggcgttctagtt 37340417  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 11298562 - 11298471
Alignment:
Q  148 ttttaaattccattccaacataattcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    ||||||||||||||||   ||| ||| ||||||| || ||||| ||||||| ||||||| || || | ||||||| ||||||||||||||||    
T  11298562 ttttaaattccattcctctatatttcattttattatgtatcaaattgttccagctcataagacccatacggcgcacgggtcggcgttctagt 11298471  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 41862894 - 41862753
Alignment:
Q  98 gatatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttattgtgaatc-aattgttc 196  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| |  ||||||||| |||||||||||| ||| |||||||||| ||| |||| ||     
T  41862894 gatatgttagctttggtgacttcgataaattttgttcatgtattctaattttttaaatttcattccaacatatttcattttattgtgtatcaaattattt 41862795  T
Q  197 cggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    || |||||| || || ||||| ||| ||||| ||||||||||    
T  41862794 cgactcatacgacccatgcggtgcacgggtcagcgttctagt 41862753  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 51382588 - 51382509
Alignment:
Q  160 ttccaacataattcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    |||||| ||| |||||||||| ||| ||||| || |||||||||||| || |||||||||||||||||||||||||||||    
T  51382588 ttccaatatatttcgttttatcgtgtatcaaattattccggctcataagacccgtgcggcgcatgggtcggcgttctagt 51382509  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 20910918 - 20910836
Alignment:
Q  98 gatatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttat 180  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||    
T  20910918 gatacggtaactttggtgactccgataaattttgtttatgtattttgattttttaaattccattccaacatatttcgttttat 20910836  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 20925366 - 20925284
Alignment:
Q  98 gatatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttat 180  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||    
T  20925366 gatacggtaactttggtgactccgataaattttgtttatgtattttgattttttaaattccattccaacatatttcgttttat 20925284  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 20910797 - 20910753
Alignment:
Q  194 ttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    |||||||||||| || |||||||||||| ||||||||||||||||    
T  20910797 ttccggctcataagacccgtgcggcgcacgggtcggcgttctagt 20910753  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 20925245 - 20925201
Alignment:
Q  194 ttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    |||||||||||| || |||||||||||| ||||||||||||||||    
T  20925245 ttccggctcataagacccgtgcggcgcacgggtcggcgttctagt 20925201  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 31661211 - 31661143
Alignment:
Q  171 ttcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    |||||||||||||| ||||| || |||||||||||| || | |||||||||| ||||| ||||||||||    
T  31661211 ttcgttttattgtgtatcaaattattccggctcataagacctgtgcggcgcacgggtccgcgttctagt 31661143  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 45239425 - 45239360
Alignment:
Q  175 ttttattgtgaatcaattg-ttccggctcatatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    |||||||||| |||||||  |||||||||||| || |||||||||||| |||||||||||||||||    
T  45239425 ttttattgtgtatcaatttattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 45239360  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 9885403 - 9885365
Alignment:
Q  203 atatgatccgtgcggcgcatgggtcggcgttctagttaa 241  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  9885403 atatgacccgtgcggcgcacgggtcggcgttctagttaa 9885365  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 42319906 - 42319974
Alignment:
Q  171 ttcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
    |||||||||||||| ||||| || |||||||||||| ||   |||||||||| ||||| ||||||||||    
T  42319906 ttcgttttattgtgtatcaaattattccggctcataagacttgtgcggcgcacgggtccgcgttctagt 42319974  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 30063268 - 30063408
Alignment:
Q  99 atatggtagctttggtgacttcgataaattttgtttatgtattctgaccttttaaattccattccaacataattcgttttattgtgaatc-aattgttcc 197  Q
    |||| ||| ||||||||||||| ||||||||||||| ||| |||| |  ||| | ||||||||| || ||| || ||||||||||| ||| |||| || |    
T  30063268 atatagtatctttggtgacttcaataaattttgtttttgtcttctaatttttcagattccattctaatatattttgttttattgtgtatcaaattatttc 30063367  T
Q  198 ggctcatatgatccgtgcggcgcatgggtcggcgttctagt 238  Q
     | | ||  || ||||| |||||||||||||||||||||||    
T  30063368 agtttatgagacccgtgtggcgcatgggtcggcgttctagt 30063408  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 2304249 - 2304341
Alignment:
Q  148 ttttaaattccattccaacataattcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    ||||||||||||||  |||||| |||||||||||||  ||||| || ||  |||||||| || || ||||||||| |||||||||||||||||    
T  2304249 ttttaaattccattttaacatatttcgttttattgtttatcaaattattttggctcataagacccatgcggcgcacgggtcggcgttctagtt 2304341  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 16030657 - 16030588
Alignment:
Q  171 ttcgttttattgtgaatcaa-ttgttccggctcatatgatccgtgcggcgcatgggtcggcgttctagtt 239  Q
    |||||||||||||| ||||| || |||  ||||||| || |||||||||||| ||||||| |||||||||    
T  16030657 ttcgttttattgtgtatcaaattattcgagctcataagacccgtgcggcgcacgggtcggtgttctagtt 16030588  T

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