View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_32 (Length: 238)
Name: NF19060_low_32
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 3438560 - 3438762
Alignment:
| Q |
18 |
ggaagtattgatgggaagtaaaaatggattcttgactaaaaggttgagaaattattctacagatcgcaacaacccttgtaaaccaactgcactttctggt |
117 |
Q |
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| T |
3438560 |
ggaagtattgatgggaagtaaaaatggattcttgactaaaaggttgagaaattattctacagatcgcaacaacccttgtaaaccaactgcactttctggt |
3438659 |
T |
|
| Q |
118 |
ttatctccctatttgcattttggacagatatctgctcaaagatgtgctttagaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3438660 |
ttatctccctatttgcattttggacagatatctgctcaaagatgtgctttagaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgc |
3438759 |
T |
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| Q |
218 |
tgt |
220 |
Q |
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| T |
3438760 |
tgt |
3438762 |
T |
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