View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19060_low_35 (Length: 213)

Name: NF19060_low_35
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19060_low_35
NF19060_low_35
[»] chr7 (5 HSPs)
chr7 (20-139)||(37616943-37617062)
chr7 (19-139)||(36828785-36828904)
chr7 (19-130)||(4554599-4554710)
chr7 (22-107)||(4968219-4968304)
chr7 (22-98)||(43282791-43282867)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-139)||(83059-83179)
[»] chr1 (3 HSPs)
chr1 (19-139)||(8113863-8113983)
chr1 (22-107)||(47974931-47975016)
chr1 (19-111)||(24765349-24765441)
[»] chr8 (2 HSPs)
chr8 (19-107)||(10289686-10289774)
chr8 (26-107)||(43266157-43266238)
[»] chr5 (2 HSPs)
chr5 (19-93)||(35228096-35228170)
chr5 (22-107)||(33672262-33672346)
[»] chr2 (1 HSPs)
chr2 (22-107)||(1658776-1658861)
[»] chr3 (3 HSPs)
chr3 (22-107)||(28160554-28160639)
chr3 (22-107)||(48663868-48663953)
chr3 (22-107)||(4100746-4100831)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 37616943 - 37617062
Alignment:
Q  20 cttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctttcatccat 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616943 cttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccat 37617042  T
Q  120 tccatcgtagaacacggccg 139  Q
    ||||||||||||||| ||||    
T  37617043 tccatcgtagaacacagccg 37617062  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 36828904 - 36828785
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 118  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36828904 gcttttccaggtcgaa-cgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagtcctattttctttcatcca 36828806  T
Q  119 ttccatcgtagaacacggccg 139  Q
    |||||||||||||||| ||||    
T  36828805 ttccatcgtagaacacagccg 36828785  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 4554710 - 4554599
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 118  Q
    |||||||||| ||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4554710 gcttttccggttcgaaacgaaattatggaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 4554611  T
Q  119 ttccatcgtaga 130  Q
    ||||||||||||    
T  4554610 ttccatcgtaga 4554599  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 4968219 - 4968304
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| ||||||||| ||||||||    
T  4968219 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaaccctattt 4968304  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 43282791 - 43282867
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaa 98  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| |||||||||    
T  43282791 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

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Target: scaffold0044 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 83059 - 83179
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 118  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  83059 gcttttccgggtcgaaacgaaataacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaaaccctattttctttcatcca 83158  T
Q  119 ttccatcgtagaacacggccg 139  Q
    |||||||||||||||| ||||    
T  83159 ttccatcgtagaacacagccg 83179  T

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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 8113863 - 8113983
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 118  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113863 gcttttccggatcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatcca 8113962  T
Q  119 ttccatcgtagaacacggccg 139  Q
    |||||| ||||||||| ||||    
T  8113963 ttccattgtagaacacagccg 8113983  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 47975016 - 47974931
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||    
T  47975016 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccctattt 47974931  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 24765349 - 24765441
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattttctt 111  Q
    |||||||||||||||   ||||||||||||||  ||||||||||||| |  |||| |||||||||||||| |||||| || ||||||||||||    
T  24765349 gcttttccgggtcgaccaaaaattacgaaattgcccctcacttaagtgacattagtagggttaattttgtaattttccaaaccctattttctt 24765441  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 10289686 - 10289774
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||    
T  10289686 gcttttccgggtcgaaacaaaattacaaaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccctattt 10289774  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 43266238 - 43266157
Alignment:
Q  26 cgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||    
T  43266238 cgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccctattt 43266157  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 35228170 - 35228096
Alignment:
Q  19 gcttttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattt 93  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||    
T  35228170 gcttttccgggtcgaaacgaaattacggaattatccctcacttatgtaacgttagaagggttaattttgtcattt 35228096  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 33672262 - 33672346
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||| ||| | |||||||  ||||| |||||||| |||| |  ||||||||||||||||||| ||||||||||||||||||    
T  33672262 tttccgggttgaagcgaaattacataattacccctcact-aagtgacattagaagggttaattttgtaattttcaaagccctattt 33672346  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 1658776 - 1658861
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||    
T  1658776 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccctattt 1658861  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 28160554 - 28160639
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  |||||| |||||||||||| ||||||||||||||||||    
T  28160554 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaaggttaattttgtaattttcaaagccctattt 28160639  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 48663953 - 48663868
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  ||||||||||||||||||| ||||||||| ||||||||    
T  48663953 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaaccctattt 48663868  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 4100746 - 4100831
Alignment:
Q  22 tttccgggtcgaaacaaaattacgaaattatccctcacttaagtaatgttagaagggttaattttgtcattttcaaagccctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| |  |||||||| |||||||||| ||||||||| ||||||||    
T  4100746 tttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaggtttaattttgtaattttcaaaaccctattt 4100831  T

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