View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_36 (Length: 213)
Name: NF19060_low_36
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 13877099 - 13876939
Alignment:
| Q |
41 |
ttttagtttctccattgaagtacgtcgaaagtttatacgctaccatccaagtca--aattatacaagtgctttctgtagtaaatctaaaccactgaacaa |
138 |
Q |
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| T |
13877099 |
ttttagtttctccattgaagtacgtcgaaagtttataccttaccatccaagtcacaaatgatataagtgctttctgtggtaaatctaaaccactgaacaa |
13877000 |
T |
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| Q |
139 |
ctaaaccattttctccaacatagacaagttctaagtcataaacaatttcacattttcatat |
199 |
Q |
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| T |
13876999 |
ctgacccattttctccaacatagataagttctaagtcataaacaatttcagattttcatat |
13876939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 13864435 - 13864286
Alignment:
| Q |
41 |
ttttagtttctccattgaagtacgtcgaaagtttatacgctaccatccaagtca--aattatacaagtgctttctgtagtaaatctaaaccactgaacaa |
138 |
Q |
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| T |
13864435 |
ttttagtttctccattgaagtacgtcgaaagtttataccttaccatccaagtcacaaatgatataagtgctttctgtggtaaatctaaaccactgaacaa |
13864336 |
T |
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| Q |
139 |
ctaaaccattttctccaacatagacaagttctaagtcataaacaatttca |
188 |
Q |
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| T |
13864335 |
ctgaaccattttctcccacatagacaagttctaagtcataaacaatttca |
13864286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 13894972 - 13894910
Alignment:
| Q |
138 |
actaaaccattttctccaacatagacaagttctaagtcataaacaatttcacattttcatata |
200 |
Q |
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| T |
13894972 |
actagaccatattctctaacatagacaagttataagtcataaacaatttcacattttcatata |
13894910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 13930543 - 13930582
Alignment:
| Q |
155 |
aacatagacaagttctaagtcataaacaatttcacatttt |
194 |
Q |
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| T |
13930543 |
aacacagacaagttctaagtcataaacaatttcacatttt |
13930582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 14023576 - 14023609
Alignment:
| Q |
161 |
gacaagttctaagtcataaacaatttcacatttt |
194 |
Q |
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| T |
14023576 |
gacaagttctaagtcataaacaatttcacatttt |
14023609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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