View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19060_low_37 (Length: 206)
Name: NF19060_low_37
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 30709401 - 30709228
Alignment:
| Q |
17 |
agaggaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctattgacgcttcttctctgagggag |
116 |
Q |
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| T |
30709401 |
agaggaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctactgccacttcttctccgagggag |
30709302 |
T |
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| Q |
117 |
actgttcctgaaacaca--gcaagtggagcaacctaatatatgcccagttctacaaaaggatcttaattgattc |
188 |
Q |
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| T |
30709301 |
actgttcttgaaacacagggcaagtggagcaacctaatatatgcccagttctacaaaaggatcttaattgattc |
30709228 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 13231633 - 13231791
Alignment:
| Q |
24 |
aatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctattgacgcttcttctctgagggagactgttc |
123 |
Q |
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| T |
13231633 |
aatactcatattttagagccgattaagccgttgaagacatcagctgttgcgacatctattggtgtgtctactgccacttcttctaggagggagatggttc |
13231732 |
T |
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| Q |
124 |
ctgaaacacagcaagtggagcaacctaatata-tgcccagttctacaaaaggatcttaa |
181 |
Q |
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| T |
13231733 |
ttgaaacacaaaaggtgtagcaacctagtatactgtctagttctacaaaaggatcttaa |
13231791 |
T |
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