View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19060_low_5 (Length: 566)
Name: NF19060_low_5
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_5 |
 | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 28095644 - 28095100
Alignment:
| Q |
1 |
attttcttttatttgagttcatatttcttaacttactttatctttctaaactcacaagttatttatgactaataggaactgcatgaagttggagacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095644 |
attttcttttatttgagttcatatttcttaacttactttatctttctaaactcacaagttatttatgactaataggaactgcatgaagttggagacacca |
28095545 |
T |
|
| Q |
101 |
tgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacgacagccaatttctttctggtttcataacaagctcccttccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28095544 |
tgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacgacagccaatttctttctggtttcataacaagctcccttccat |
28095445 |
T |
|
| Q |
201 |
ttctctcttctgtactattggatgtaaataccacccgaacgttacatctattttctcctttttcaaaataaccatcaatggctatgaatgctttcgtgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095444 |
ttctctcttctgtactattggatgtaaataccacccgaacgttacatctattttctcctttttcaaaataaccatcaatggctatgaatgctttcgtgaa |
28095345 |
T |
|
| Q |
301 |
ggtccaactaattttccttatattaaaattgaagccaatcatacatatctagttggtttgaaactactagacctggacagattgggtgaagcatttttaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28095344 |
ggtccaactaattttccttatattaaaattgaagccaatcatacatatctagttggtttgaaactactagacctggacagattgggtgaagcatttttaa |
28095245 |
T |
|
| Q |
401 |
aaagggaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgaccttaaggaaagtcgaatgcacatatttaaacaagaaagtagaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095244 |
aaagggaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgaccttaaggaaagtcgaatgcacatatttaaacaagaaagtagaat |
28095145 |
T |
|
| Q |
501 |
ggaggatattcagttcaccaatccttataaaaagagagaattagt |
545 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28095144 |
ggaggatattcagttcaccaatcattataaaaagagagaattagt |
28095100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 64 - 544
Target Start/End: Original strand, 28152218 - 28152698
Alignment:
| Q |
64 |
tatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacgacagc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | ||| | |||||||| ||||||||| || |||| ||||||| ||||| |||| |
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|
| T |
28152218 |
tatgactaataggaactgcatgaagttggagacatcatgttttgtttgaccggaactttgaggattccagagtcgtttaagcaccagagcacgagacaaa |
28152317 |
T |
|
| Q |
164 |
caatttctttctggtttcataacaagctcccttccatttctctcttctgtactattggatgtaaataccacccgaacgttacatctattttctccttttt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| || | ||| || |||||||||||||| |||| |
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|
| T |
28152318 |
caatttctttctggtttcataacaagctcccttccattgctctcttctgtactactggccataaatataacacaaacttttcatctattttctccatttt |
28152417 |
T |
|
| Q |
264 |
caaaataaccatcaatggctatgaatgctttcgtgaaggtccaactaattttccttatattaaaattgaagccaatcatacatatctagttggtttgaaa |
363 |
Q |
| |
|
|||||| | |||||||| ||||||| || ||| ||||| || || ||||||| | | || ||| || |||||||||||||| || ||||| | |
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| T |
28152418 |
taaaatattcctcaatggcattgaatgcgctcttgactgtccatctcatcctccttatttcactatagaacccgatcatacatatctattttgtttgcca |
28152517 |
T |
|
| Q |
364 |
ctactagacctggacagattgggtgaagcatttttaaaaagggaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgaccttaagg |
463 |
Q |
| |
|
|||| |||| ||| ||| ||| ||||| | |||||||||| |||||||||||||||||||||| | |||| |||| | |||||||||||||||||| |
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|
| T |
28152518 |
ctacaagacatggtaagaatggatgaagtacttttaaaaagtgaatggaaccatgcggtggttaggtatgatttttcgatcatgccatttgaccttaagg |
28152617 |
T |
|
| Q |
464 |
aaagtcgaatgcacatatttaaacaagaaagtagaatggaggatattcagttcaccaatccttataaaaagagagaattag |
544 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28152618 |
aaagtcgaatgcatatattcaaacaagaaagcagcatggaggatattcagttcaccaatccttataaaaagcaagaattag |
28152698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 28525218 - 28525367
Alignment:
| Q |
59 |
ttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacg |
158 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||| |||| |||| | ||||||||| | |||||||||| ||||||||| ||||||| || | |
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|
| T |
28525218 |
ttatttatggctaacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatggg |
28525317 |
T |
|
| Q |
159 |
acagccaatttctttctggtttcataacaagctcccttccatttctctct |
208 |
Q |
| |
|
||| |||||||||| ||||||| |||||| |||||||||||| |||||| |
|
|
| T |
28525318 |
acatacaatttctttttggtttcgtaacaacctcccttccattgctctct |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 26340670 - 26340534
Alignment:
| Q |
18 |
ttcatatttcttaacttactttatctttctaaactcacaagttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccagga |
117 |
Q |
| |
|
|||||||||| || | |||||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||| | | || ||| | |||||| | |
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|
| T |
26340670 |
ttcatatttcatagcgcactttatctttctaaacttgcaagttattcatgactaacaggaactgcatgatgttggaggccctatattttgtttgccaaaa |
26340571 |
T |
|
| Q |
118 |
actttaaggattccaaggtggtttgagcaccaaagca |
154 |
Q |
| |
|
||| |||||||||| |||||||||| |||| |||| |
|
|
| T |
26340570 |
actgcaaggattccagagtggtttgagaaccagagca |
26340534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 536
Target Start/End: Complemental strand, 26340295 - 26340165
Alignment:
| Q |
406 |
gaatggaaccatgcggtggttacatgtgatatttcaactgtgccatttgac-cttaaggaaagtcgaatgcacatatttaaacaagaaagtagaatggag |
504 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||| | |||||||| || ||||||||| ||||||||||||||| ||||| ||| |||| || ||| |
|
|
| T |
26340295 |
gaatggaaccatgcggaggttacataagatttttcgatcatgccatttcacttttaaggaaactcgaatgcacatattcaaacaggaatgtagcatagag |
26340196 |
T |
|
| Q |
505 |
gatattcagttcaccaatccttataaaaagag |
536 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |
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|
| T |
26340195 |
aatattca-atcaccaatccttttaaaaagag |
26340165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 28239370 - 28239511
Alignment:
| Q |
59 |
ttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacg |
158 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||| ||||| ||| | || ||||| | | ||||||||| ||||||||| || |||| || | |
|
|
| T |
28239370 |
ttatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatggg |
28239469 |
T |
|
| Q |
159 |
acagccaatttctttctggtttcataacaagctcccttccat |
200 |
Q |
| |
|
||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
28239470 |
acatacaatttctttttggtttcgtaacaagctcccttccat |
28239511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 28246412 - 28246489
Alignment:
| Q |
123 |
aaggattccaaggtggtttgagcaccaaagcacacgacagccaatttctttctggtttcataacaagctcccttccat |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
28246412 |
aaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccat |
28246489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 55420 - 55280
Alignment:
| Q |
59 |
ttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacg |
158 |
Q |
| |
|
||||||||| |||| |||| ||||||| | |||| | ||||||||| | ||||| ||| | |||||||||| ||||||||||||||||| || | |
|
|
| T |
55420 |
ttatttatggctaacaggatatgcatgaggctggacaaaccatgttttgtttgccgggatttgcaaggattccagagtggtttgagcaccaaaacatggg |
55321 |
T |
|
| Q |
159 |
acagccaatttctttctggtttcataacaagctcccttcca |
199 |
Q |
| |
|
||| | |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
55320 |
acatacgatttctttttggtttcgtaacaagctcccttcca |
55280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 39532 - 39673
Alignment:
| Q |
59 |
ttatttatgactaataggaactgcatgaagttggagacaccatgtttcgattgccaggaactttaaggattccaaggtggtttgagcaccaaagcacacg |
158 |
Q |
| |
|
||||||||| |||| ||||||||||||| | ||||| ||||| ||| | || ||||| | | ||||||||| ||||||||| || |||| || | |
|
|
| T |
39532 |
ttatttatggctaacaggaactgcatgaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatggg |
39631 |
T |
|
| Q |
159 |
acagccaatttctttctggtttcataacaagctcccttccat |
200 |
Q |
| |
|
||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
39632 |
acatacaatttctttttggtttcgtaacaagctcccttccat |
39673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 46574 - 46651
Alignment:
| Q |
123 |
aaggattccaaggtggtttgagcaccaaagcacacgacagccaatttctttctggtttcataacaagctcccttccat |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
46574 |
aaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccat |
46651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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