View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19060_low_6 (Length: 549)
Name: NF19060_low_6
Description: NF19060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19060_low_6 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 4 - 549
Target Start/End: Original strand, 28095122 - 28095667
Alignment:
| Q |
4 |
gattggtgaactgaatatcctccattctactttcttgtttaaatatgtgcattcgactttccttaaggtcaaatggcacagttgaaatatcacatgtaac |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095122 |
gattggtgaactgaatatcctccattctactttcttgtttaaatatgtgcattcgactttccttaaggtcaaatggcacagttgaaatatcacatgtaac |
28095221 |
T |
|
| Q |
104 |
caccgcatggttccattccctttttaaaaatgcttcacccaatctgtccaggtctagtagtttcaaaccaactagatatgtatgattggcttcaatttta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095222 |
caccgcatggttccattccctttttaaaaatgcttcacccaatctgtccaggtctagtagtttcaaaccaactagatatgtatgattggcttcaatttta |
28095321 |
T |
|
| Q |
204 |
atataaggaaaattagttggaccttcacgaaagcattcatagccattgatggttattttgaaaaaggagaaaatagatgtaacgttcgggtggtatttac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095322 |
atataaggaaaattagttggaccttcacgaaagcattcatagccattgatggttattttgaaaaaggagaaaatagatgtaacgttcgggtggtatttac |
28095421 |
T |
|
| Q |
304 |
atccaatagtacagaagagagaaatggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatcct |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095422 |
atccaatagtacagaagagagaaatggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatcct |
28095521 |
T |
|
| Q |
404 |
taaagttcctggcaatcgaaacatggtgtctccaacttcatgcagttcctattagtcataaataacttgtgagtttagaaagataaagtaagttaagaaa |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095522 |
taaagttcctggcaatcgaaacatggtgtctccaacttcatgcagttcctattagtcataaataacttgtgagtttagaaagataaagtaagttaagaaa |
28095621 |
T |
|
| Q |
504 |
tatgaactcaaataaaagaaaatgcaaagcctgatccagtagcatg |
549 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28095622 |
tatgaactcaaataaaagaaaatgcaaaacctgatccagtagcatg |
28095667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 28152680 - 28152218
Alignment:
| Q |
1 |
aaggattggtgaactgaatatcctccattctactttcttgtttaaatatgtgcattcgactttccttaaggtcaaatggcacagttgaaatatcacatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||| |||| | | |
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| T |
28152680 |
aaggattggtgaactgaatatcctccatgctgctttcttgtttgaatatatgcattcgactttccttaaggtcaaatggcatgatcgaaaaatcatacct |
28152581 |
T |
|
| Q |
101 |
aaccaccgcatggttccattccctttttaaaaatgcttcacccaatctgtccaggtctagtagtttcaaaccaactagatatgtatgattggcttcaatt |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||| | ||||| ||| ||| ||| |||| ||||| ||||| || |||||||||||||| || ||| || |
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| T |
28152580 |
aaccaccgcatggttccattcactttttaaaagtacttcatccattcttaccatgtcttgtagtggcaaacaaaatagatatgtatgatcgggttctata |
28152481 |
T |
|
| Q |
201 |
ttaatataaggaaaattagttggaccttcacgaaagcattcatagccattgatggttattttgaaaaaggagaaaatagatgtaacgttcgggtggtatt |
300 |
Q |
| |
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| | ||||||| || || ||||| ||| || ||||||| |||||||| | |||||| |||| |||||||||||||| || ||| | || |||| |
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| T |
28152480 |
gtgaaataaggaggatgagatggacagtcaagagcgcattcaatgccattgaggaatattttaaaaatggagaaaatagatgaaaagtttgtgttatatt |
28152381 |
T |
|
| Q |
301 |
tacatccaatagtacagaagagagaaatggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaat |
400 |
Q |
| |
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|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||| || |||||| |
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| T |
28152380 |
tatggccagtagtacagaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctctggtgcttaaacgactctggaat |
28152281 |
T |
|
| Q |
401 |
ccttaaagttcctggcaatcgaaacatggtgtctccaacttcatgcagttcctattagtcata |
463 |
Q |
| |
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||| |||||||| | ||| | ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28152280 |
cctcaaagttccggtcaaacaaaacatgatgtctccaacttcatgcagttcctattagtcata |
28152218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 468
Target Start/End: Complemental strand, 28525367 - 28525218
Alignment:
| Q |
319 |
agagagaaatggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatccttaaagttcctggcaa |
418 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||||| |||||||||| |||| || ||||||| ||||||||| |||||||||| | ||||||||| |
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| T |
28525367 |
agagagcaatggaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatccttgcaaatcctggcaa |
28525268 |
T |
|
| Q |
419 |
tcgaaacatggtgtctccaacttcatgcagttcctattagtcataaataa |
468 |
Q |
| |
|
| |||| |||| ||||| | ||||||||||||| |||| ||||||||| |
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| T |
28525267 |
acaaaacctggttcctccagcctcatgcagttcctgttagccataaataa |
28525218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 509
Target Start/End: Original strand, 26340534 - 26340670
Alignment:
| Q |
373 |
tgctttggtgctcaaaccaccttggaatccttaaagttcctggcaatcgaaacatggtgtctccaacttcatgcagttcctattagtcataaataacttg |
472 |
Q |
| |
|
|||| |||| |||||||||| |||||||||| |||| |||||| | ||| || | | ||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
26340534 |
tgctctggttctcaaaccactctggaatccttgcagtttttggcaaacaaaatatagggcctccaacatcatgcagttcctgttagtcatgaataacttg |
26340633 |
T |
|
| Q |
473 |
tgagtttagaaagataaagtaagttaagaaatatgaa |
509 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| |
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| T |
26340634 |
caagtttagaaagataaagtgcgctatgaaatatgaa |
26340670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26340175 - 26340295
Alignment:
| Q |
1 |
aaggattggtgaactgaatatcctccattctactttcttgtttaaatatgtgcattcgactttccttaag-gtcaaatggcacagttgaaatatcacatg |
99 |
Q |
| |
|
|||||||||||| ||||||| ||| || |||| ||| ||||| ||||||||||||||| ||||||||| || |||||||| | |||| ||| ||| |
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| T |
26340175 |
aaggattggtgat-tgaatattctctatgctacattcctgtttgaatatgtgcattcgagtttccttaaaagtgaaatggcatgatcgaaaaatcttatg |
26340273 |
T |
|
| Q |
100 |
taaccaccgcatggttccattc |
121 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
26340274 |
taacctccgcatggttccattc |
26340295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 468
Target Start/End: Complemental strand, 28239511 - 28239370
Alignment:
| Q |
327 |
atggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatccttaaagttcctggcaatcgaaaca |
426 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| || |||| || ||||||||| ||||||||| | | ||||| || | ||| | |
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|
| T |
28239511 |
atggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcctcacaaatcctgaaaaacaaaata |
28239412 |
T |
|
| Q |
427 |
tggtgtctccaacttcatgcagttcctattagtcataaataa |
468 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||| ||||||||| |
|
|
| T |
28239411 |
tggttcctccagcctcatgcagttcctgttagccataaataa |
28239370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 28246489 - 28246412
Alignment:
| Q |
327 |
atggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatcctt |
404 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| |||||||||| |||||||| |||||||||| |
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|
| T |
28246489 |
atggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcctt |
28246412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 468
Target Start/End: Original strand, 55280 - 55420
Alignment:
| Q |
328 |
tggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatccttaaagttcctggcaatcgaaacat |
427 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||| || ||||||||||||||||| |||||||||| | ||| ||||| | |||||| |
|
|
| T |
55280 |
tggaagggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatccttgcaaatcccggcaaacaaaacat |
55379 |
T |
|
| Q |
428 |
ggtgtctccaacttcatgcagttcctattagtcataaataa |
468 |
Q |
| |
|
||| | |||| | ||||||| |||| |||| ||||||||| |
|
|
| T |
55380 |
ggtttgtccagcctcatgcatatcctgttagccataaataa |
55420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 468
Target Start/End: Complemental strand, 39673 - 39532
Alignment:
| Q |
327 |
atggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatccttaaagttcctggcaatcgaaaca |
426 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| || |||| || ||||||||| ||||||||| | | ||||| || | ||| | |
|
|
| T |
39673 |
atggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcctcacaaatcctgaaaaacaaaata |
39574 |
T |
|
| Q |
427 |
tggtgtctccaacttcatgcagttcctattagtcataaataa |
468 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||| ||||||||| |
|
|
| T |
39573 |
tggttcctccagcctcatgcagttcctgttagccataaataa |
39532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 46651 - 46574
Alignment:
| Q |
327 |
atggaagggagcttgttatgaaaccagaaagaaattggctgtcgtgtgctttggtgctcaaaccaccttggaatcctt |
404 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| |||||||||| |||||||| |||||||||| |
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|
| T |
46651 |
atggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcctt |
46574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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