View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_high_4 (Length: 422)
Name: NF19061_high_4
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 3371118 - 3370718
Alignment:
| Q |
11 |
cacagaatgtggatagaagaaagagaagtcaatgctctatggaaaggaaaaatgtcatataataggtatactgtatgcacatggtgcatatgcagatttg |
110 |
Q |
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| T |
3371118 |
cacagaatgtggatagaagaaagagaagtcaatgctctatggaaaggaaaaatgtcatataataggtatactgtatacacatggtgcatatgcagatttg |
3371019 |
T |
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| Q |
111 |
aattgcatgctactagaacattgtgtatagcacatttgtggttgttaggttaagattgaatgctgcccgnnnnnnntagattttgataccctt-aaattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||| | |
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| T |
3371018 |
aattgcatgctactagaacattgtgtatagcacatttggggttgttaggttaagattgaatgctgcccgaaaaaaatagattttgattttctttaaatct |
3370919 |
T |
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| Q |
210 |
aaatattgagttcgaaattaaactattcaatcttgatacaacgaacgaccatcaattagtttcttgaatgtatgacattcggaccacatgcaatccatat |
309 |
Q |
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|||||||||||| ||| |||||||||| ||| ||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3370918 |
aaatattgagttagaatttaaactatttaattttgatccaacgaacgactaccatttagtttcttgaatgtatgacattcggaccacatgcaatccatat |
3370819 |
T |
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| Q |
310 |
ttgtgtacatacaagttccttctaattatttatttcatagtttgataaacaattaaaaggaaaatttatatttgtagggtatcatatctctataatgatg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3370818 |
ttgtgtacatacaagttccttctaattatttatttcatagtttgataaacaattaaaaggaaaatttatatttgtagggtatcatatctctataacgatg |
3370719 |
T |
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| Q |
410 |
a |
410 |
Q |
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| T |
3370718 |
a |
3370718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 3345351 - 3345281
Alignment:
| Q |
11 |
cacagaatgtggatagaagaaagagaagtcaatgctctatggaaaggaaaaatgtcatataataggtatac |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3345351 |
cacagaatgtggatagaagaaagagaagtcaatgctctatggaaaggaaagatgtcatataataggtatac |
3345281 |
T |
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