View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_high_8 (Length: 297)
Name: NF19061_high_8
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 45011002 - 45010704
Alignment:
| Q |
1 |
aggaccatatatataatgagttaatgaactgtgttataacttaaaacctaagttcttggctcctgaagtttctatacatgggtttacattgaaagaaatg |
100 |
Q |
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| T |
45011002 |
aggaccatatatataatgagttaatgaactgtgttataacttaaaacctaagttcttggctcctgaagtttctatacatgggtttacattgaaagaaatg |
45010903 |
T |
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| Q |
101 |
tgcttacaagaaggttaagtccattttgggtgttgtaagaagacgataagaagacaacgcgtcaagcagtcagcaaagctcgagtgcagaaacaatcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45010902 |
tgcttacaagaaggttaagtccattttgggtgttgtaagaagacgataagaagacaacgcgtcaagcagtcagcaaagctcgggtgcagaaacaatcctt |
45010803 |
T |
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| Q |
201 |
aaggcatcgtgtgtgcgactcaaaaa--cacagtctccggcctcatcactcctgtagcagtttgactacggcataggctgcaacacttgcaatggtttg |
297 |
Q |
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| T |
45010802 |
aaggcatcgtgtgtgcgactcaaaaacacacagtctccggcctcatcactcatgtagcagtttgactacggcataggctgcaacacttgcaatggtttg |
45010704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 34188642 - 34188555
Alignment:
| Q |
11 |
atataatgagttaatgaactgtgttataacttaaaacctaagttcttggctcctgaagtttctatacatgggtttacattgaaagaaa |
98 |
Q |
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||||||||||||||||| | ||| | ||||| ||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||| |
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| T |
34188642 |
atataatgagttaatgacccatgtcagaacttggaaccttagttcttggctcctgaattttatatgcatgggtttacattgaaagaaa |
34188555 |
T |
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