View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_high_9 (Length: 285)
Name: NF19061_high_9
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 44307699 - 44307965
Alignment:
| Q |
1 |
ttgggatctctgttgttactcacgtatacaacacgtgggtcgatgtagtatggatcgtagtcatggtagcgtagcattattgtttcccagtctccaacca |
100 |
Q |
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| T |
44307699 |
ttgggatctctgttgttactcacgtatacaacacgtgggtcgatgtagtatggatcgtagtcatggtagcgtagcattaatgtttcccagtctccaacca |
44307798 |
T |
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| Q |
101 |
ttctaatgtaagggtccctgagtccagaaagccagacgttgcgcagatgctcctgtgatttgttggagaagtgacagannnnnnnaagggtggagagaac |
200 |
Q |
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| T |
44307799 |
ttctaatgtaagggtccctgagtccagaaagccagacgttgcgcagatgctcctgtgatttgttggagaagtgacggagggggggaagggtggagagaac |
44307898 |
T |
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| Q |
201 |
ggaggaagatggataaagagaggagcgtacggtggagtagagaaggcgtggcaaggaggaccttaag |
267 |
Q |
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| T |
44307899 |
ggaggaagatggataaagagaggagcgtacggtggagtcgagaaggcatggcaaggaggaccttaag |
44307965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 44317976 - 44318117
Alignment:
| Q |
123 |
tccagaaagccagacgttgcgcagatgctcctgtgatttgttggagaagtgacagannnnnnnaagggtggagagaacggaggaagatggataaagagag |
222 |
Q |
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| T |
44317976 |
tccagaaatccatacgtggcgcagctgctccactgacttgttggagaagtgacggaggtggagaggggtggagagaacggagaaaggcggatagagagag |
44318075 |
T |
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| Q |
223 |
gagcgtacggtggagtagagaaggcgtggcaaggaggacctt |
264 |
Q |
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| T |
44318076 |
gagcgtacggtggagtagagaaggcgtggtatggaggacctt |
44318117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 43897287 - 43897336
Alignment:
| Q |
126 |
agaaagccagacgttgcgcagatgctcctgtgatttgttggagaagtgac |
175 |
Q |
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| T |
43897287 |
agaaagacagacgttgcgcagatgctccactgaattgttggagaagtgac |
43897336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 18703063 - 18703107
Alignment:
| Q |
220 |
gaggagcgtacggtggagtagagaaggcgtggcaaggaggacctt |
264 |
Q |
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| T |
18703063 |
gaggagcgtacggtggagtagagaagcagtggaaaggaggacctt |
18703107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 4085579 - 4085623
Alignment:
| Q |
220 |
gaggagcgtacggtggagtagagaaggcgtggcaaggaggacctt |
264 |
Q |
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| T |
4085579 |
gaggagcgtacggtggagtagagaagttgtggcaaggaggtcctt |
4085623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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