View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19061_low_1 (Length: 561)
Name: NF19061_low_1
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_low_1 |
 | |
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| [»] scaffold0008 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 31265049 - 31265582
Alignment:
| Q |
1 |
gataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcctactgtatcttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265049 |
gataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcctactgtatcttc |
31265148 |
T |
|
| Q |
101 |
aataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtcttatatggcatgggcatgttgacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
31265149 |
aataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtattatatggcatg------ttgacag |
31265242 |
T |
|
| Q |
201 |
tgtgcaaacacnnnnnnnnnnnnnnnnnnnatgcaaatagaaagtttatatcctaacattgaaggtatcattaactgcatccatcttaccacacttattt |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31265243 |
tgtgcaaacactttttttttttttttt---atgcaaatagaaagtttatatcctatcattggaggtatcattaactgcatccatcttaccacacttattt |
31265339 |
T |
|
| Q |
301 |
cctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31265340 |
cctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcat |
31265439 |
T |
|
| Q |
401 |
caaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31265440 |
caaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatct |
31265539 |
T |
|
| Q |
501 |
ctaaaaccacatacataatggttaaaggcttgaacaaggacat |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31265540 |
ctaaaaccacatacataatggttaaaggcttgaacaaggacat |
31265582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 543
Target Start/End: Complemental strand, 22045549 - 22045272
Alignment:
| Q |
267 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
366 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | ||| |
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|
| T |
22045549 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga |
22045450 |
T |
|
| Q |
367 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat |
465 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | ||| ||| ||| ||| ||||||||||| ||| || |
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| T |
22045449 |
gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatat |
22045350 |
T |
|
| Q |
466 |
atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacat |
543 |
Q |
| |
|
| | |||||||||||||| |||| || ||||||||| || |||| | | ||||||||| ||||| ||||| ||||| |
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|
| T |
22045349 |
aagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacat |
22045272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 300 - 545
Target Start/End: Original strand, 22357555 - 22357801
Alignment:
| Q |
300 |
tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca |
399 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| | | |||| | | ||||||||| | | |||||||||||||| |||| ||| ||||||||||||| |
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| T |
22357555 |
tcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctcatatcatcc |
22357654 |
T |
|
| Q |
400 |
tcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccat |
498 |
Q |
| |
|
||||||| ||| |||| ||| ||||| | ||| | | ||| ||| ||||||||||| ||| ||| | |||||||||||||| |||| || |||||| |
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|
| T |
22357655 |
tcaaggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccat |
22357754 |
T |
|
| Q |
499 |
ctctaaaaccacatacataatggttaaaggcttgaacaaggacattg |
545 |
Q |
| |
|
|||||| |||| | ||||||||||| ||||||||||| ||||||| |
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| T |
22357755 |
ctctaataccaacttgataatggttaacggcttgaacaaagacattg |
22357801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 267 - 541
Target Start/End: Original strand, 12780713 - 12780988
Alignment:
| Q |
267 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
366 |
Q |
| |
|
||||||||| |||| ||||| |||| ||| |||||||| |||||| | | ||||||||||||||||||||||||| |||||||||| | | | | |
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|
| T |
12780713 |
atcattaaccgcatttttcttaacacatctatctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttca |
12780812 |
T |
|
| Q |
367 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat |
465 |
Q |
| |
|
||| | ||| |||| ||||||||||||||||| ||||| ||| |||| || ||| |||| ||| ||| ||||||| |||||||||||| |||||| |
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| T |
12780813 |
acattgtttgcttttaatgtcctcatatcatcctcaagtgttgaaacccgattaagaaaatccttgtgttcacccatcaacttttgatgttcagccaaat |
12780912 |
T |
|
| Q |
466 |
atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggac |
541 |
Q |
| |
|
| |||||||||||||||| |||| | || |||||||||||||| | || ||||||||| ||||||||||||||| |
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|
| T |
12780913 |
aagtttgcacatcaaatagagggtttgcatcatctctaaaaccaacttcaaaatggttaacggcttgaacaaggac |
12780988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 543
Target Start/End: Complemental strand, 44355936 - 44355659
Alignment:
| Q |
267 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
366 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | ||| |
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|
| T |
44355936 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga |
44355837 |
T |
|
| Q |
367 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat |
465 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | ||| ||| ||| ||| ||||||||||| ||| || |
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|
| T |
44355836 |
gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatat |
44355737 |
T |
|
| Q |
466 |
atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacat |
543 |
Q |
| |
|
| | |||||||||||||| |||| || ||||||||| || |||| | | ||||||||| ||||| ||||| ||||| |
|
|
| T |
44355736 |
aagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacat |
44355659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 543
Target Start/End: Original strand, 84179 - 84458
Alignment:
| Q |
267 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
366 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| || | | ||| |
|
|
| T |
84179 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtga |
84278 |
T |
|
| Q |
367 |
acactattttctttca--atgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaa |
463 |
Q |
| |
|
||||||||| |||| | || ||||||||||||| ||||||| ||| || | ||||||||| | ||| ||||||| ||| ||||||||| | ||| |
|
|
| T |
84279 |
acactatttgcttttaatatctcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcatccaccaacctttgatgtttagccat |
84378 |
T |
|
| Q |
464 |
atatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacat |
543 |
Q |
| |
|
||| | |||||||||||||| |||| || ||||||||| || |||| | | ||||||||| ||||| ||||| ||||| |
|
|
| T |
84379 |
ataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacat |
84458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 531
Target Start/End: Complemental strand, 2501625 - 2501360
Alignment:
| Q |
267 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaac-atg |
365 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||| ||||||| || || |
|
|
| T |
2501625 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaata-ttttctctactgtg |
2501527 |
T |
|
| Q |
366 |
aacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaa |
464 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||| ||||||| ||| || | ||||||||| | ||| || ||| ||| ||||||||||| ||| | |
|
|
| T |
2501526 |
aacactatttgattttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgttcagccata |
2501427 |
T |
|
| Q |
465 |
tatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggctt |
531 |
Q |
| |
|
|| | |||||||||||||| |||| | ||||||||| || |||| | || ||||||||| ||||| |
|
|
| T |
2501426 |
taagcttgcacatcaaataaagggtacgcaccatctccaataccaacttcagaatggttaacggctt |
2501360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 543
Target Start/End: Original strand, 31395865 - 31396067
Alignment:
| Q |
342 |
ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatcc |
441 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||| ||| ||||||||||||| ||||||| ||| || | ||||||||| | | | || || |
|
|
| T |
31395865 |
ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttttgttcgccc |
31395964 |
T |
|
| Q |
442 |
atcaa-ttttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaagga |
540 |
Q |
| |
|
| ||| ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||||| || |||| | || ||||||||| ||||| ||||| || |
|
|
| T |
31395965 |
accaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttcaaaatggttaacggctttaacaaaga |
31396064 |
T |
|
| Q |
541 |
cat |
543 |
Q |
| |
|
||| |
|
|
| T |
31396065 |
cat |
31396067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 406
Target Start/End: Original strand, 2501926 - 2502053
Alignment:
| Q |
278 |
catccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttc |
377 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | |||||||||||| | |
|
|
| T |
2501926 |
catcaatcttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgc |
2502024 |
T |
|
| Q |
378 |
tttcaatgtcctcatatcatcatcaagga |
406 |
Q |
| |
|
||| ||| || |||||||||| ||||||| |
|
|
| T |
2502025 |
tttaaatatcatcatatcatcctcaagga |
2502053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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