View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_low_2 (Length: 465)
Name: NF19061_low_2
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 134 - 367
Target Start/End: Original strand, 44552540 - 44552773
Alignment:
| Q |
134 |
aatggattgttagctatagtttattgatggctgcattttgtgaggaagggaggatataagattgtggctagttgtggaaagaaatgataaggaaattgaa |
233 |
Q |
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| T |
44552540 |
aatggattgttagctatagtttattgatggctgcattttgtgaggaagggaggatataagattgtgggtagttgtggaaagaaatgataaggaaattgag |
44552639 |
T |
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| Q |
234 |
acttatgtgataagttgtggaaagaaattacgaagaaggtgcaagtgtttttacctgggtttctttgaagaagattgatgaacatgatcatcaagatgaa |
333 |
Q |
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| T |
44552640 |
ccttatgtgataagttgtggaaataaattacgaagaaggtgtaagtgtttttacctggggttctttgaagaagattgatgaacatgatcatcaagatgaa |
44552739 |
T |
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| Q |
334 |
caataagagatgaaataagatgaaaaaatggaga |
367 |
Q |
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| T |
44552740 |
caataagagatggaataagatgaaaaaatggaga |
44552773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 44552400 - 44552515
Alignment:
| Q |
18 |
acaaaaaccagttgtgtctttcgttatttggctagactcgcggataatatgtgtagttatgaccgctatcgggataaacttggtgccctatatttgtaat |
117 |
Q |
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| T |
44552400 |
acaaaaactagttgtgtctttcgttatttggttagactcgcggataatgtgtgtagttatgaccgctatcgggat-aacttggtgccctatatttgtaat |
44552498 |
T |
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| Q |
118 |
taaaatgggttggttga |
134 |
Q |
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| T |
44552499 |
taaaatgggttggttga |
44552515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 44552793 - 44552838
Alignment:
| Q |
382 |
tgtggatggttcactggttagcacaatgggtaatactccttctagc |
427 |
Q |
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| T |
44552793 |
tgtggatggttcactagttagcacaatgggtaatgctccttctagc |
44552838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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