View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_low_3 (Length: 432)
Name: NF19061_low_3
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 13853489 - 13853907
Alignment:
| Q |
16 |
agaatatcattcaacagaagaaagattaagaaaaacagatacatgatgca-------------gaagggaatcatacaagtaaagaatctccccattctt |
102 |
Q |
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| T |
13853489 |
agaatatcattcaacagaagaaagattaagaaaaacagatacatgatgcaatgccaaggaaaagaagggaatcatacaagtaaagaatctccccattctt |
13853588 |
T |
|
| Q |
103 |
aacagtacactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctccggagaaggaaatacctagtcggcttct |
202 |
Q |
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| T |
13853589 |
aacagtacattcaaacggtgaagggtcattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaatacctagtcggcttct |
13853688 |
T |
|
| Q |
203 |
caagttccaaatcaaactctccagtatcctacnnnnnnnnnntatatccacaacaccccaattggattcaattccaaaagctaaaacctttggcagtgac |
302 |
Q |
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| T |
13853689 |
caagttccaaatcaaactctccagtatcctacaaaaaatatatatatccacaacaccccaaatggattcaattccaaaagctaaaacctttggcagtgac |
13853788 |
T |
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| Q |
303 |
cttatttgcataaagaacttaactcgacacttatagcattgacgcttatcatataagtacttatgtgtgacaaaacgtcaagtaaaatcaaactgtcttt |
402 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
13853789 |
cttgtttgcataaagaacttaactcgacacttatagcattgacgcttatcatataagtacttatgtataacaaaacgtcaagtaaaatcaaactgtcttt |
13853888 |
T |
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| Q |
403 |
atttaagctctatgttctt |
421 |
Q |
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| T |
13853889 |
atttaagctctatgttctt |
13853907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 10220477 - 10220300
Alignment:
| Q |
17 |
gaatatcattcaacagaagaaagattaagaaaaacagatacatgatgca--------gaagggaatcatacaagtaaagaatctccccattcttaacagt |
108 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
10220477 |
gaatatcattcaacagaagaaagatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagt |
10220378 |
T |
|
| Q |
109 |
acactcaaacggtgaagggtcattgaagtataaatgaaactttgaaatctcatcctccaagttctccggagaaggaaa |
186 |
Q |
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| T |
10220377 |
acactcaaacggtggagggccattgaagtataaaggaaactttgaaatctcgtcctccaagttctccggagaaggaaa |
10220300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 10220275 - 10220227
Alignment:
| Q |
186 |
atacctagtcggcttctcaagttccaaatcaaactctccagtatcctac |
234 |
Q |
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| T |
10220275 |
atacctagttggcttgtcaagttccaaatcaaactctccagtttcctac |
10220227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 24193491 - 24193529
Alignment:
| Q |
330 |
cacttatagcattgacgcttatcatataagtacttatgt |
368 |
Q |
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| T |
24193491 |
cacttatagcataaacgcttatcatataagtacttatgt |
24193529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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