View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_low_6 (Length: 375)
Name: NF19061_low_6
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 145 - 357
Target Start/End: Complemental strand, 41947886 - 41947674
Alignment:
| Q |
145 |
atgttgactcttatattaaaaacattattatcattttttgcaacactgtatacactcatgttagaaatttattagctgggacacatagctggtaaaggtt |
244 |
Q |
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| T |
41947886 |
atgttgactcttatattaaaaacattattatcattttttgcaacactgtatacactcatgttagaaatttattagctgggacacatagctggtaaaggtt |
41947787 |
T |
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| Q |
245 |
tttctatgtccctaagaaaaatcggtagattcaaatctactactatattttctgttcaatttatttaaaccaaattaaatcatgaattgtactctgtcat |
344 |
Q |
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| T |
41947786 |
tttctatgtccccaagaaaaatcggtagattcaaatctactactatattttctattcaatttatttaaaccaaattaaatcatgaattgtactctgtcat |
41947687 |
T |
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| Q |
345 |
ccccatcaatgaa |
357 |
Q |
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| T |
41947686 |
ccccatcaatgaa |
41947674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 41947988 - 41947872
Alignment:
| Q |
12 |
atgaatcgaagcattcttaatnnnnnnnctataaagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacat |
111 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947988 |
atgaatcgaagcattcttaataaaaaaactat-aagatgactagattttggtctacaattaaaagtgactagaacagattagttagccgtattacaacat |
41947890 |
T |
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| Q |
112 |
ttgatgttgactcttata |
129 |
Q |
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| T |
41947889 |
ttgatgttgactcttata |
41947872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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