View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19061_low_7 (Length: 314)
Name: NF19061_low_7
Description: NF19061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19061_low_7 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 44307353 - 44307647
Alignment:
| Q |
20 |
tccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaaagtttcatggatct |
119 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44307353 |
tccaatataacaatcgtcaatgcttcgtaatggaacttgaattgcagcacagcgatgattaagcttagattttacttgatcaaaaaagttccatggatct |
44307452 |
T |
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| Q |
120 |
gctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaa |
219 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44307453 |
gctccttccagctcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaa |
44307552 |
T |
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| Q |
220 |
gacaagaaagaacaagaactgcactgtcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacatcaaatacggttatgtttttatag |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44307553 |
gacaagaaagaacaggaactgcactgtcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacatcaaatacggttatgtttttatag |
44307647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 44317526 - 44317794
Alignment:
| Q |
20 |
tccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaaagtttcatggatct |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||| ||||| |
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| T |
44317526 |
tccaatataacaatcgtcaatgt---gtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatctacaatgttccatagatct |
44317622 |
T |
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| Q |
120 |
gctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaa |
219 |
Q |
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||||||||| | || |||||| |||||||||| | |||||| |||||||||||||||||||||| ||| | ||||| ||| || ||||||||| || |
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| T |
44317623 |
gctccttcctcataaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggattcggttctaacaccattaa |
44317722 |
T |
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| Q |
220 |
gacaagaaagaacaagaactgcactgtcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacat |
291 |
Q |
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| T |
44317723 |
cacaagaaagaacaagaattgcactgtcaaaaatacgagaagctagttgaacatcaacattgaaatcaacat |
44317794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 146 - 297
Target Start/End: Original strand, 44302256 - 44302407
Alignment:
| Q |
146 |
aaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaagacaagaaagaacaagaactgcactg |
245 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||| || |||||||||||||||||| ||||||| |
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| T |
44302256 |
aaatataagccttggaaattgaaatcttgtcatttgttgataaatagcaatggattcatttttaacacaatctcgacaagaaagaacaagaattgcactg |
44302355 |
T |
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| Q |
246 |
tcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacatcaaata |
297 |
Q |
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| T |
44302356 |
tcgaaaatatgcaaagttatttcagcatcaacaattgaattaacatcaaata |
44302407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 312
Target Start/End: Original strand, 43896914 - 43897174
Alignment:
| Q |
47 |
tattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaa---agtttcatggatctgct------ccttccaactcaata |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||| | ||||| || | |||| | | ||| |
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| T |
43896914 |
tattggaacttgaattgcagcacaacgatgattaagcttagatattacttgatcaagattagattttacttgatctactatttcccgttcccaattaatg |
43897013 |
T |
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| Q |
138 |
tcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaagaca-agaaagaacaaga |
236 |
Q |
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|| || |||||||||| | ||||||||||||||||||||||||||||| ||| ||| |||||||| || | | ||||||||||||| |
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| T |
43897014 |
tcttcgataaatataagccttggaaattgaaatcttgtcatttgttga---------------tcattttcaacaccatcaaaaaagagaaagaacaaga |
43897098 |
T |
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| Q |
237 |
actgcactgtcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacatcaaatacggttatgtttttat |
312 |
Q |
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| || ||||||||||||||| ||| ||||||||||||||||||||||||||| || | || |||||||||||||| |
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| T |
43897099 |
attgaactgtcgaaaatatgtgaagctatttcagcatcaacaatggaatcaacttcgattagggttatgtttttat |
43897174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 44302205 - 44302249
Alignment:
| Q |
46 |
gtattggaacttgaattgcagcacaacgatgattaagcttagatt |
90 |
Q |
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| T |
44302205 |
gtattggaacttgaattgcagcacaatgatgattaagcgtagatt |
44302249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 4084990 - 4085261
Alignment:
| Q |
20 |
tccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaaagtttcatggatct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||||| |
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| T |
4084990 |
tccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatctacgatgttccatagatct |
4085089 |
T |
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| Q |
120 |
gctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaa |
219 |
Q |
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||||||| | |||| |||||| |||||||||| | |||||| |||||||||||||||||||||| ||| ||||| ||| | |||||||||| || |
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| T |
4085090 |
gctcctttctgatcaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaataataatggattcggtcttaacaccatcaa |
4085189 |
T |
|
| Q |
220 |
gacaagaaagaacaagaactgcactgtcgaaaatatgcaaaggtatttcagcatcaacaatggaatcaacat |
291 |
Q |
| |
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||||||||||||||| || |||||||||||||||| || ||| || || | ||||||| || ||||||||| |
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| T |
4085190 |
gacaagaaagaacaataattgcactgtcgaaaatacgcgaagctagttgaacatcaacgttgaaatcaacat |
4085261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 8158490 - 8158266
Alignment:
| Q |
20 |
tccaatataacaatcgtcaatgcttcgtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaaagtttcatggatct |
119 |
Q |
| |
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||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||| |
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| T |
8158490 |
tccaacataacaatcgtcaatgcat---attggaacttgaattgcagcacaacgatgattaagcttagattttacttgatctacaacgttccatggatct |
8158394 |
T |
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| Q |
120 |
gctccttccaactcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaa |
219 |
Q |
| |
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|||||| || |||| ||||| |||||||||| | |||||| |||||||||||||||||||||| ||| | ||||| ||| |||||||||||| |
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| T |
8158393 |
gctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggattcggttttaacaccatctc |
8158294 |
T |
|
| Q |
220 |
gacaagaaagaacaagaactgcactgtc |
247 |
Q |
| |
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|||||||||||||||||| ||||||||| |
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| T |
8158293 |
gacaagaaagaacaagaattgcactgtc |
8158266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 18702506 - 18702714
Alignment:
| Q |
46 |
gtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatcaaaaaagtttcatggatctgctccttccaactcaatatcgtctat |
145 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||| |||||||||||||| | | |||||| || |
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| T |
18702506 |
gtattggaacttgaattgcagcacaacgatgattaagcttagattttacttgatctacaatgttccatagatctgctccttcctgatacagatcgtcaat |
18702605 |
T |
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| Q |
146 |
aaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaattttaacaccataaagacaagaaagaacaagaactgcactg |
245 |
Q |
| |
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|||||||| | | |||| |||||||||||||||||||||| || | ||||| || |||||||||||| || ||||||||||||||||| ||||||| |
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| T |
18702606 |
aaatataagcctaggaagttgaaatcttgtcatttgttgatccatagtaatggatttggttttaacaccatcaacacaagaaagaacaagaattgcactg |
18702705 |
T |
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| Q |
246 |
tcgaaaata |
254 |
Q |
| |
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||||||||| |
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| T |
18702706 |
tcgaaaata |
18702714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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