View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_high_20 (Length: 320)
Name: NF19062_high_20
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28430686 - 28430380
Alignment:
| Q |
1 |
ttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatca |
100 |
Q |
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| T |
28430686 |
ttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatca |
28430587 |
T |
|
| Q |
101 |
caaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430586 |
caaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagta |
28430487 |
T |
|
| Q |
201 |
attttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaatttttgtaccttgtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430486 |
attttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaatttttgtaccttgtct |
28430387 |
T |
|
| Q |
301 |
cccacct |
307 |
Q |
| |
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||||||| |
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| T |
28430386 |
cccacct |
28430380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 13373191 - 13373469
Alignment:
| Q |
6 |
aagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaag |
105 |
Q |
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| T |
13373191 |
aagtccaaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaag |
13373290 |
T |
|
| Q |
106 |
ctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaatttt |
205 |
Q |
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| T |
13373291 |
tgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattct |
13373390 |
T |
|
| Q |
206 |
cgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaa |
284 |
Q |
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| T |
13373391 |
cgagatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaa |
13373469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 13378985 - 13379264
Alignment:
| Q |
4 |
tcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaa |
103 |
Q |
| |
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|||| |||||||| ||||| ||||||||||| |||||||| || || ||||||||||| ||||||||||| | || | || ||||| | || | || |
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| T |
13378985 |
tcaaatccaaaatgtttcattgggctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataa |
13379084 |
T |
|
| Q |
104 |
agctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaatt |
203 |
Q |
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|| ||||||| ||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| |||| || ||||| |
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| T |
13379085 |
agtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcaataatt |
13379184 |
T |
|
| Q |
204 |
ttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttga |
283 |
Q |
| |
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||||||| ||| ||| |||| ||||| ||||||||| |||||||||||| ||||| ||| | ||||||||||||| |
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| T |
13379185 |
ttcgagatcctcgccacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttga |
13379264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 13419471 - 13419602
Alignment:
| Q |
28 |
ctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgt |
127 |
Q |
| |
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|||||||| ||||| || ||||| || |||||| | |||||||||||||||| ||||| ||||||| ||||||||| ||||| | ||||||| || |
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| T |
13419471 |
ctatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt |
13419570 |
T |
|
| Q |
128 |
cggagtagcctccatatgtgatggtgccatca |
159 |
Q |
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| T |
13419571 |
cggagtaacctccatatgtgacggtgccatca |
13419602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 13447022 - 13447153
Alignment:
| Q |
28 |
ctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgt |
127 |
Q |
| |
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|||||||| |||| || ||||| || |||||| | ||| |||||||||||| ||||| ||||||| ||||||||| ||||| | ||||||| || |
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| T |
13447022 |
ctatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt |
13447121 |
T |
|
| Q |
128 |
cggagtagcctccatatgtgatggtgccatca |
159 |
Q |
| |
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||||| | |||||||| ||||| ||||||||| |
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| T |
13447122 |
cggagaaacctccataggtgatagtgccatca |
13447153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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