View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19062_high_22 (Length: 284)
Name: NF19062_high_22
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 267
Target Start/End: Original strand, 35105107 - 35105344
Alignment:
| Q |
29 |
tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaattcatttgagttg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35105107 |
tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaactcatttgagttg |
35105206 |
T |
|
| Q |
129 |
atctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcgaaattcgttcttccggtgccaatttaagttggctaacttaacttnnnn |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35105207 |
atctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcggaattcgttcttccggtgccaatttaagttggctaacttaactt-aaa |
35105305 |
T |
|
| Q |
229 |
nnnnnttatatagttgtaattattattgttgttgtattt |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
35105306 |
aaaaattatatagttgtaattattattattgttgtattt |
35105344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 49225495 - 49225440
Alignment:
| Q |
125 |
gttgatctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctcg |
180 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
49225495 |
gttggtctggtggtgttggcttaaggcctgagagtgtgctcttcctcgatgtctcg |
49225440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 22429609 - 22429659
Alignment:
| Q |
117 |
tcatttgagttgatctgatggtattggcttaagacctgagagtgtgctcat |
167 |
Q |
| |
|
|||||| |||||||||| |||||||| ||| |||||| ||||||||||||| |
|
|
| T |
22429609 |
tcatttaagttgatctggtggtattgacttgagacctaagagtgtgctcat |
22429659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 46545732 - 46545768
Alignment:
| Q |
135 |
tggtattggcttaagacctgagagtgtgctcatcctc |
171 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
46545732 |
tggtattggcttgagacctgagagtgtgctcctcctc |
46545768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 6164993 - 6164753
Alignment:
| Q |
29 |
tcaagatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaattcatttgagttg |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6164993 |
tcaaaatatgcgtcgatgaacttaaaataaaattagtttgactcatccatgatattgctcgtgtttaattatatagttgtaattaaactcatttgagttg |
6164894 |
T |
|
| Q |
129 |
atctgatggtattggcttaagacctgagagtgtgctcatcctcg--atatctcgaaattcgttcttccggtgccaatttaagttggctaacttaacttnn |
226 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6164893 |
atctgatggtattgacctgagacctgagagtgtgctcatcctcgatatatctcgaaattcgttcttccggtgccaatttaagctggctaacttaacttta |
6164794 |
T |
|
| Q |
227 |
nnnnnnnttatatagttgtaattattattgttgttgtattt |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
6164793 |
aaaaaaattatatagttgtaattattattattgttgtattt |
6164753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 29115101 - 29115058
Alignment:
| Q |
57 |
aaaattagtttgactcatccatgatattgctcgtgtttaattat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
29115101 |
aaaattagtttgactcatccatgattttgtttgtgtttaattat |
29115058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 24191845 - 24191903
Alignment:
| Q |
121 |
ttgagttgatctgatggtattggcttaagacctgagagtgtgctcatcctcgatatctc |
179 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| |||| || ||||| |
|
|
| T |
24191845 |
ttgagttggcctgatggtattggcttgggacctgagagtgtgctcctccttgagatctc |
24191903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 18372280 - 18372321
Alignment:
| Q |
132 |
tgatggtattggcttaagacctgagagtgtgctcatcctcga |
173 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
18372280 |
tgatggtattgacttgagacctgagagtatgctcatcctcga |
18372321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 19016042 - 19016090
Alignment:
| Q |
125 |
gttgatctgatggtattggcttaagacctgagagtgtgctcatcctcga |
173 |
Q |
| |
|
|||| ||||||||||||||||| |||| || |||||||||| ||||||| |
|
|
| T |
19016042 |
gttggtctgatggtattggcttgagacttgggagtgtgctcctcctcga |
19016090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University