View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19062_high_23 (Length: 275)

Name: NF19062_high_23
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19062_high_23
NF19062_high_23
[»] chr8 (7 HSPs)
chr8 (51-275)||(28430177-28430402)
chr8 (54-112)||(23273825-23273883)
chr8 (51-111)||(17845068-17845128)
chr8 (51-112)||(12722309-12722370)
chr8 (56-101)||(24580033-24580078)
chr8 (54-112)||(12520552-12520610)
chr8 (12-41)||(17845024-17845053)
[»] chr4 (7 HSPs)
chr4 (51-113)||(12885044-12885106)
chr4 (12-101)||(27572457-27572548)
chr4 (12-112)||(22851335-22851437)
chr4 (12-101)||(36193438-36193527)
chr4 (57-107)||(30563537-30563587)
chr4 (56-100)||(19145910-19145954)
chr4 (12-40)||(30563606-30563634)
[»] chr1 (6 HSPs)
chr1 (54-112)||(4941606-4941664)
chr1 (56-112)||(8221831-8221887)
chr1 (54-111)||(21486054-21486111)
chr1 (56-101)||(51879054-51879099)
chr1 (12-111)||(3167298-3167397)
chr1 (12-98)||(40777901-40777988)
[»] chr6 (3 HSPs)
chr6 (12-100)||(24209327-24209417)
chr6 (54-101)||(3861081-3861128)
chr6 (54-111)||(15494243-15494300)
[»] chr2 (7 HSPs)
chr2 (52-113)||(20511684-20511745)
chr2 (56-111)||(6606255-6606310)
chr2 (56-111)||(13511161-13511216)
chr2 (55-111)||(36076293-36076349)
chr2 (51-98)||(36521044-36521091)
chr2 (54-96)||(37606048-37606090)
chr2 (56-100)||(11033270-11033314)
[»] chr3 (5 HSPs)
chr3 (51-111)||(52032973-52033033)
chr3 (54-101)||(53461796-53461843)
chr3 (54-110)||(47042663-47042719)
chr3 (54-101)||(21795460-21795507)
chr3 (56-99)||(33440712-33440755)
[»] chr5 (3 HSPs)
chr5 (56-101)||(43585682-43585727)
chr5 (53-112)||(19527955-19528014)
chr5 (55-112)||(3956134-3956191)
[»] chr7 (1 HSPs)
chr7 (54-110)||(7738956-7739012)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 51 - 275
Target Start/End: Original strand, 28430177 - 28430402
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctgaggctgatccagtggaagttatgcttttgttcatttcac 150  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||    
T  28430177 catccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggtcggccctgaggctgatccagtggaagttatgtttttgttcatttaac 28430276  T
Q  151 aaaaaacttttgtaagtgtctgagcaaaatagtaacaagaatgcactgaattctaatttgac-nnnnnnnnntgtaggcacgagattgtaggtgaagtaa 249  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||||||    
T  28430277 aaaaaacttttgtaagtgtctgagcaaaatagtaacaagaatacactgaattctaatttgacaaaaaaaaaatgtaggcacgagattgtaggtgaagtaa 28430376  T
Q  250 cagaggtgggagacaaggtacaaaaa 275  Q
    ||||||||||||||||||||||||||    
T  28430377 cagaggtgggagacaaggtacaaaaa 28430402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 23273825 - 23273883
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  23273825 ccaaaattttgaggcctaaaacccttgtttgggttgcttggcccttaggacggccctga 23273883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 17845068 - 17845128
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||    
T  17845068 catccaaaattttgaggcctataacccttgcttgggttgcttggcccttagaccggccctg 17845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 12722370 - 12722309
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||||||||||||||||||||| | ||| ||| |||  |||||||||||| |||||||||    
T  12722370 catccaaaattttgaggcctaaagtctttgcttgagttatttggcccttagaccggccctga 12722309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 24580033 - 24580078
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||    
T  24580033 aaaattttgaggactaaagcccttgcttgggtggcttggcccttag 24580078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 12520552 - 12520610
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    ||||||| |||||||||||| |||||| |||||| | |||||||||||  |||||||||    
T  12520552 ccaaaatcttgaggcctaaaacccttgcttgggtggtttggcccttaggccggccctga 12520610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 17845024 - 17845053
Alignment:
Q  12 tatacttataaccaaattaattttttagag 41  Q
    ||||||||||||||||||||||||||||||    
T  17845024 tatacttataaccaaattaattttttagag 17845053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 12885106 - 12885044
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctgag 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  12885106 catccaaaattttgaggcctaaaacccttgtttgggttgcttgacccttagaccggccctgag 12885044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 27572548 - 27572457
Alignment:
Q  12 tatacttataaccaaattaattttttagaggnnnnnnnn--catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    |||| ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27572548 tataattataaccaaattaattttttagaggcattttttttcatccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttag 27572457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 22851335 - 22851437
Alignment:
Q  12 tatacttataaccaaattaattttttagaggnnnnnnnn--catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccc 109  Q
    |||||||||||||||||||||||||||||||          || |||||||||||||| |||||||||||| ||||||||||| ||||||||  ||||||    
T  22851335 tatacttataaccaaattaattttttagaggcgttttttttcacccaaaattttgaggtctaaagcccttgcttgggttgcttagcccttaggccggccc 22851434  T
Q  110 tga 112  Q
    |||    
T  22851435 tga 22851437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 36193438 - 36193527
Alignment:
Q  12 tatacttataaccaaattaattttttagaggnnnnnnnncatccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    |||||||||||||||||||||||||||||||         ||||||||| ||||| | |||| |||||| ||| ||||||||||||||||    
T  36193438 tatacttataaccaaattaattttttagaggcttttttttatccaaaatattgagacttaaaacccttgcttgagttgcttggcccttag 36193527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 30563587 - 30563537
Alignment:
Q  57 aaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggc 107  Q
    ||||||||||||||||| |||||  |||||||||||||||||||| |||||    
T  30563587 aaattttgaggcctaaaacccttacttgggttgcttggcccttaggtcggc 30563537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 19145954 - 19145910
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggccctta 100  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||    
T  19145954 aaaatcttgaggcctaaagcccttgtttgggtggcttgaccctta 19145910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 30563634 - 30563606
Alignment:
Q  12 tatacttataaccaaattaattttttaga 40  Q
    |||||||||||||||||||||||||||||    
T  30563634 tatacttataaccaaattaattttttaga 30563606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 4941664 - 4941606
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  4941664 ccaaaattttgaggcctaaaacccttgtttgggttgcttggcccttagaccggtcctga 4941606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 8221831 - 8221887
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||    
T  8221831 aaaattttgaggcctaaagcacttgcttgggttgcttggcccttaggccggccctga 8221887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 21486054 - 21486111
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||| ||||||||    
T  21486054 ccaaaattttgaggcctaaagcccttacttgagttgcttgacccttagaccggccctg 21486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 51879099 - 51879054
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  51879099 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttag 51879054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 3167397 - 3167298
Alignment:
Q  12 tatacttataaccaaattaattttttagagg--nnnnnnnncatccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccc 109  Q
    |||||||||||||||||||||||||||||||          || ||||||  ||||| |||||| |||||| ||||||||||||||||||||  ||||||    
T  3167397 tatacttataaccaaattaattttttagaggccttttttgtcacccaaaa--ttgagtcctaaaacccttgcttgggttgcttggcccttaggccggccc 3167300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 40777988 - 40777901
Alignment:
Q  12 tatacttataaccaaattaattttttagaggnnnnnnnn-catccaaaattttgaggcctaaagcccttgtttgggttgcttggccct 98  Q
    |||||||||||||||||||| ||||||||||         || | ||||||||| |||||||||| |||| |||||||||||||||||    
T  40777988 tatacttataaccaaattaaatttttagaggcctttttttcacctaaaattttgtggcctaaagctcttgcttgggttgcttggccct 40777901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 24209327 - 24209417
Alignment:
Q  12 tatacttataaccaaattaattttttagaggnnnnnnnn--catccaaaattttgaggcctaaagcccttgtttgggttgcttggccctta 100  Q
    |||||||||||||||||||||||||||||||          | ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  24209327 tatacttataaccaaattaattttttagaggtcttttttttcgtccaaaattttgaggcctatagcccttgcttgggttgcttggccctta 24209417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 3861081 - 3861128
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  3861081 ccaaaattttgaaacctaaaacccttgtttgggttgcttggcccttag 3861128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 15494300 - 15494243
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||| ||||||||||||||||| | || ||| |||||||||||||  ||||||||    
T  15494300 ccaaaatcttgaggcctaaagccctcgctttggtggcttggcccttaggccggccctg 15494243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 20511745 - 20511684
Alignment:
Q  52 atccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctgag 113  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||||||  ||||||||||    
T  20511745 atccaaaattttgagacctaaagcccttgtttgggttgtttgacccttagggcggccctgag 20511684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 6606310 - 6606255
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||    
T  6606310 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggccctg 6606255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 13511161 - 13511216
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||    
T  13511161 aaaattttgaggcctaaagcccttgcttgggtggcttgacccttaggtcggccctg 13511216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 36076349 - 36076293
Alignment:
Q  55 caaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    |||||||||| |||||||| |||||| |||||||||||||| |||||| ||||||||    
T  36076349 caaaattttgtggcctaaaacccttgcttgggttgcttggctcttagaccggccctg 36076293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 36521044 - 36521091
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggccct 98  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  36521044 catccaaaattttgaggcttaaagcacttgcttgggttgcttggccct 36521091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 37606048 - 37606090
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcc 96  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  37606048 ccaaaattttgagacctaagacccttgtttgggttgcttggcc 37606090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 11033270 - 11033314
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggccctta 100  Q
    |||||||||||||||||| |||||| |||| ||||||| ||||||    
T  11033270 aaaattttgaggcctaaaacccttgcttggattgcttgaccctta 11033314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 52032973 - 52033033
Alignment:
Q  51 catccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctg 111  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||| ||||||||    
T  52032973 catccaaaattgtgtggcctaaaacccttgcttgggttgcttggcccttagaccggccctg 52033033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 53461796 - 53461843
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||||    
T  53461796 ccaaaattttgaggcctaaaacccttgtgtaggttgcttggcccttag 53461843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 47042719 - 47042663
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccct 110  Q
    ||||||| |||| |||||||||| |||||||||| |||||||||||||  |||||||    
T  47042719 ccaaaatcttgatgcctaaagccattgtttgggtggcttggcccttaggccggccct 47042663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 21795507 - 21795460
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    ||||||| ||||||||||||||||||| |||| | |||||||||||||    
T  21795507 ccaaaatcttgaggcctaaagcccttgcttggatggcttggcccttag 21795460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 33440712 - 33440755
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggccctt 99  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    
T  33440712 aaaaatttgaggcctaaagcccttgcttgggtggcttggccctt 33440755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 43585682 - 43585727
Alignment:
Q  56 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 101  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  43585682 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttag 43585727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 19528014 - 19527955
Alignment:
Q  53 tccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||||||||||||||||||| | ||| |||||||||||||| |||||  |||||||||    
T  19528014 tccaaaattttgaggcctaaagtcattgattgggttgcttggcacttaggccggccctga 19527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 3956134 - 3956191
Alignment:
Q  55 caaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccctga 112  Q
    |||||| | ||||||||||||||||| |||||| |||| |||||| | ||||||||||    
T  3956134 caaaatctggaggcctaaagcccttgcttgggtggcttagcccttgggtcggccctga 3956191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 7738956 - 7739012
Alignment:
Q  54 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagatcggccct 110  Q
    ||||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||    
T  7738956 ccaaaattttgaggcttaaagcccttgctttgattgcttggcccttaggtcggccct 7739012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University