View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_high_26 (Length: 250)
Name: NF19062_high_26
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29269552 - 29269317
Alignment:
| Q |
1 |
catataccaacttagccatctatcagtaataagtcgatttagattaacttatttgagcttatgtactaacataaacactagcgccggctcttataatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29269552 |
catataccaacttagccatctatcagtaatatgtcgatttagattaacttatttgagcttatgtactaacataaacactagcgccggcacttataatcaa |
29269453 |
T |
|
| Q |
101 |
agggggtgcccgatgtccaacacctgtcaacacttgtccgtgtccggcaccaacacatatgactacattcaattttgtaattttcttaattataactaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29269452 |
agggggtgcccgatgtccaacacctgtcaacacttgtccatgtacggcaccaacacatatgactacattcaattttgtaattttcttaattataactaat |
29269353 |
T |
|
| Q |
201 |
gtcaaagcgtcagtgtcgcgcgttagtaggtgcttc |
236 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||| |
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| T |
29269352 |
gtcaaagcgtcagtgtcgcgtgtttgtaggtgcttc |
29269317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 26796490 - 26796460
Alignment:
| Q |
49 |
ttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
26796490 |
ttatttgagcttatgtactaacataaacact |
26796460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 31723955 - 31723913
Alignment:
| Q |
37 |
atttagattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
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|||| |||| |||||||||||||||||||||| |||||||||| |
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|
| T |
31723955 |
atttggattgacttatttgagcttatgtactagcataaacact |
31723913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 34862181 - 34862140
Alignment:
| Q |
38 |
tttagattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||||| |
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|
| T |
34862181 |
tttagattgatttatttgagcttatgtacttacataaacact |
34862140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 9996002 - 9995972
Alignment:
| Q |
49 |
ttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
9996002 |
ttatttgagcttatgtactaacataaacact |
9995972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 10217019 - 10216989
Alignment:
| Q |
49 |
ttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
10217019 |
ttatttgagcttatgtactaacataaacact |
10216989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 41848636 - 41848678
Alignment:
| Q |
37 |
atttagattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||||||||| |
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|
| T |
41848636 |
atttagattgacttatttgagtttatctactaacataaacact |
41848678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 40240746 - 40240783
Alignment:
| Q |
42 |
gattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
40240746 |
gattaacttatttgagcttatatactagcataaacact |
40240783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 9700146 - 9700109
Alignment:
| Q |
42 |
gattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
9700146 |
gattaacttatttgagcttatctactagcataaacact |
9700109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 18512440 - 18512477
Alignment:
| Q |
42 |
gattaacttatttgagcttatgtactaacataaacact |
79 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
18512440 |
gattaacttatttgagcttatctactgacataaacact |
18512477 |
T |
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