View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19062_high_29 (Length: 241)

Name: NF19062_high_29
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19062_high_29
NF19062_high_29
[»] chr7 (18 HSPs)
chr7 (48-241)||(4501544-4501737)
chr7 (61-241)||(45613470-45613650)
chr7 (54-239)||(24527882-24528067)
chr7 (48-241)||(32585433-32585626)
chr7 (48-236)||(47679411-47679598)
chr7 (48-237)||(28516919-28517108)
chr7 (56-240)||(10905397-10905581)
chr7 (55-199)||(19277586-19277729)
chr7 (161-241)||(5827653-5827733)
chr7 (127-220)||(4175577-4175670)
chr7 (54-156)||(983241-983343)
chr7 (63-238)||(43857171-43857340)
chr7 (55-121)||(3676933-3676999)
chr7 (18-50)||(983022-983054)
chr7 (18-50)||(4501331-4501363)
chr7 (18-50)||(21326840-21326872)
chr7 (18-50)||(27521544-27521576)
chr7 (18-50)||(32584674-32584706)
[»] chr2 (17 HSPs)
chr2 (48-239)||(17344924-17345115)
chr2 (54-239)||(20142370-20142555)
chr2 (55-241)||(4412694-4412880)
chr2 (55-241)||(41867536-41867722)
chr2 (56-241)||(44686712-44686896)
chr2 (55-239)||(9685045-9685229)
chr2 (88-240)||(28225326-28225478)
chr2 (55-220)||(5532719-5532884)
chr2 (67-239)||(33612171-33612343)
chr2 (61-175)||(18744648-18744762)
chr2 (127-241)||(19161454-19161567)
chr2 (55-174)||(3826020-3826143)
chr2 (48-116)||(27502647-27502715)
chr2 (18-51)||(44686493-44686526)
chr2 (18-50)||(2888589-2888621)
chr2 (18-50)||(4413068-4413100)
chr2 (86-118)||(5679601-5679633)
[»] chr6 (14 HSPs)
chr6 (48-241)||(32115975-32116168)
chr6 (54-239)||(45299-45484)
chr6 (55-239)||(4206226-4206410)
chr6 (48-241)||(34304782-34304976)
chr6 (48-217)||(357369-357538)
chr6 (104-239)||(29337716-29337851)
chr6 (88-174)||(14538634-14538720)
chr6 (143-239)||(32120310-32120406)
chr6 (48-241)||(12401617-12401805)
chr6 (88-178)||(28008730-28008820)
chr6 (87-157)||(20693312-20693382)
chr6 (88-236)||(7200206-7200354)
chr6 (90-238)||(8374929-8375076)
chr6 (18-50)||(357719-357751)
[»] chr3 (16 HSPs)
chr3 (48-239)||(53785995-53786185)
chr3 (55-239)||(29862090-29862274)
chr3 (48-235)||(52411536-52411723)
chr3 (54-193)||(52741187-52741326)
chr3 (61-207)||(49018262-49018408)
chr3 (48-228)||(35236414-35236594)
chr3 (54-118)||(39582980-39583044)
chr3 (88-228)||(45676428-45676567)
chr3 (86-233)||(43123468-43123615)
chr3 (145-219)||(7501789-7501862)
chr3 (88-178)||(44199093-44199183)
chr3 (140-218)||(37992695-37992772)
chr3 (48-189)||(38146346-38146488)
chr3 (48-155)||(7901138-7901243)
chr3 (18-50)||(26772831-26772863)
chr3 (18-50)||(39583231-39583263)
[»] chr5 (15 HSPs)
chr5 (48-238)||(26212214-26212403)
chr5 (53-241)||(433583-433771)
chr5 (68-237)||(15291655-15291824)
chr5 (48-238)||(38446452-38446642)
chr5 (58-241)||(27336989-27337172)
chr5 (48-236)||(6534196-6534384)
chr5 (48-218)||(35310734-35310904)
chr5 (55-239)||(3113796-3113979)
chr5 (48-237)||(13166542-13166731)
chr5 (184-241)||(25662945-25663002)
chr5 (48-241)||(32269421-32269620)
chr5 (18-50)||(15292028-15292060)
chr5 (165-217)||(26009867-26009919)
chr5 (18-50)||(37873640-37873672)
chr5 (18-50)||(43129607-43129639)
[»] chr8 (14 HSPs)
chr8 (54-238)||(24125320-24125504)
chr8 (48-241)||(39434953-39435146)
chr8 (48-239)||(37517375-37517566)
chr8 (61-239)||(500526-500704)
chr8 (88-241)||(42921758-42921908)
chr8 (61-241)||(10189842-10190022)
chr8 (139-236)||(25021437-25021534)
chr8 (109-236)||(27715669-27715796)
chr8 (110-209)||(43134349-43134448)
chr8 (18-50)||(500300-500332)
chr8 (140-241)||(139681-139782)
chr8 (18-50)||(8882400-8882432)
chr8 (18-50)||(38815367-38815399)
chr8 (18-50)||(39434740-39434772)
[»] chr4 (14 HSPs)
chr4 (48-239)||(16957822-16958013)
chr4 (54-239)||(53170793-53170975)
chr4 (55-201)||(3330243-3330389)
chr4 (48-201)||(34952457-34952610)
chr4 (88-239)||(56461744-56461894)
chr4 (88-240)||(12917995-12918154)
chr4 (48-178)||(50000616-50000746)
chr4 (55-157)||(25504586-25504689)
chr4 (48-178)||(48506731-48506861)
chr4 (48-117)||(26521774-26521843)
chr4 (105-241)||(25706851-25706986)
chr4 (58-173)||(132682-132796)
chr4 (18-50)||(53619659-53619691)
chr4 (18-50)||(23255777-23255809)
[»] chr1 (13 HSPs)
chr1 (48-241)||(34644852-34645045)
chr1 (55-225)||(22347170-22347340)
chr1 (54-239)||(28040757-28040942)
chr1 (48-175)||(29169488-29169615)
chr1 (53-239)||(7794545-7794732)
chr1 (90-186)||(19035775-19035872)
chr1 (56-239)||(38731874-38732060)
chr1 (51-167)||(37931921-37932036)
chr1 (141-239)||(37200634-37200732)
chr1 (96-219)||(35386966-35387089)
chr1 (18-50)||(19035520-19035552)
chr1 (18-50)||(29169795-29169827)
chr1 (98-158)||(31575086-31575146)
[»] scaffold0186 (1 HSPs)
scaffold0186 (88-239)||(20047-20198)
[»] scaffold0490 (1 HSPs)
scaffold0490 (18-50)||(6407-6439)
[»] scaffold0119 (1 HSPs)
scaffold0119 (17-49)||(16206-16238)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 4501544 - 4501737
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    ||||||| |||||||||||| |||||||||||||| | | ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  4501544 cacaagcacctctttcttcattgatactcccgcctatctgaatatatcaaaaagtacatccctaataaagtcgtgtgtgtacttaaagtcgggaagctcc 4501643  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  4501644 ttacaatgaacgacatggtccccaaaagtatccaggcacgccttacgacaaacatgacacacctcatcaatagaaaataatggaatcataagac 4501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 45613650 - 45613470
Alignment:
Q  61 ttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatga 160  Q
    ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||| |||| |||||| |||| || |||| ||||||||||||| |     
T  45613650 ttcttcactgatactcctgcccgtctgaatatatcaaaaagtacatccctaacaaagtcgtgtctgtactgaaagccgggaagttccttacaatgaacgg 45613551  T
Q  161 catgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||||||||||| ||  |||| ||||| | |||||||||||||||||||||||| ||||| ||||||||||||||    
T  45613550 catgctccccaaaagtatccatacacgtcttacaataaacaggacacacctcatcaataggaaatagtggaatcataagac 45613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 24527882 - 24528067
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||||||||||| ||| ||| || | ||||||||||||||||||||||| |||||||  ||| ||||||||||| ||| ||||||||| |||    
T  24527882 cgcctccttcttcactgatattcctgccagtctgaatatatcaaaaagtacatccctcacaaagtcatgtctgtacttaaagccgaaaagctccttgcaa 24527981  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||| | |||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| |||||  ||||| ||||||||||||    
T  24527982 tgaacggcatgctccccaaaagtatccaggtacgccttacgacaaacagggcacccctcaacaataagaaatagtggaatcataag 24528067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 32585433 - 32585626
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||| ||||||| |||    | |||||||||||| | ||| ||||||||||||  ||  |||||||||||||||||||||||    
T  32585433 cacatgcgcctccttcttcacttatactcctgcccacctgaatatatcaaaaggcacacccctaacaaagtcatgcctgtacttaaagtcgagaagctcc 32585532  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||| ||||| |||||||||||||||||||| ||| || ||||||||||||| ||| |||||||||| ||||| ||||| ||||||||||||||    
T  32585533 ttaccatgaacgacatgctccccaaaagtatccagacatgccttacgacaaatagggcacacctcattaataggaaatagtggaatcataagac 32585626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 47679411 - 47679598
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||| ||| |||||||||||||| |||||| |  | ||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||| |    
T  47679411 cacacgcgactccttcttcactgatacccccgcccgcctgaatatatcaaaaagtacatccctaacaaagtcgtga-tgtacttaaagtcgggaagcttc 47679509  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcat 236  Q
    ||||||| || ||| |||||||||||||||| || || |||||||||||||||||  |||||||| ||||||| ||||| |||||||||    
T  47679510 ttacaataaacgacgtgctccccaaaagtatccaagcgcgccttacgacaaacagagcacacctcgtcaatagcaaatagtggaatcat 47679598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 28517108 - 28516919
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| |||||||| ||| |||||||  |  | |||||||||||||||||||||||||||||||  ||  |||||||||||  ||||||||||    
T  28517108 cacaggcgcctccttcttcaccgatgctcccgctcgcctgaatatatcaaaaagtacatccctaacaaagtcatgcttgtacttaaagctgagaagctcc 28517009  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcata 237  Q
    |||||||||| |||||||| |  |||||||| ||  || ||||||||||||||||| |||||||||||||||  ||| | ||||||||||    
T  28517008 ttacaatgaacgacatgcttcataaaagtatccaaacatgccttacgacaaacagggcacacctcatcaataaaaaaaagtggaatcata 28516919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 10905397 - 10905581
Alignment:
Q  56 cctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatg 155  Q
    |||| ||||||||||||||||||||||   |  |||||||||||||||||| ||||| ||| |  |   | ||||||||  |||||||||||||||||||    
T  10905397 cctccttcttcactgatactcccgccttcctggatatatcaaaaagtacattcctaaaaaactcatacttatacttaaacccgagaagctccttacaatg 10905496  T
Q  156 aatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataaga 240  Q
    ||  ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||   ||||| |||||||||||||    
T  10905497 aacaacatgctccccaaaagtatccaggcaagccttacgacaaatagggcacacctcatcaatgagaaatagtggaatcataaga 10905581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 19277586 - 19277729
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||| ||| ||| || | | ||||| |||||| ||||||||||||||||  ||| ||| ||||||||||  || || ||||||||    
T  19277586 gcctccttcttcactgatattcctgcccgtctgagtatataaaaaagaacatccctaacaaagtcatgtatgt-cttaaagtcggaaaactacttacaat 19277684  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaa 199  Q
    ||| |||||||||||||||||||| ||| ||||||||||||||||    
T  19277685 gaacgacatgctccccaaaagtatccagacacgccttacgacaaa 19277729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 5827653 - 5827733
Alignment:
Q  161 catgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||    
T  5827653 catgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataagaaatagtggaatcataagac 5827733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 4175577 - 4175670
Alignment:
Q  127 tacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatag 220  Q
    |||||||||||||||||||||||||||| ||   |||||| |||||||||||| |||||||||||| || ||||||| |||||| |||||||||    
T  4175577 tacttaaagtcgagaagctccttacaataaactgcatgctacccaaaagtatttaggcacgccttaggaaaaacagggcacaccacatcaatag 4175670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 983241 - 983343
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||||||||||| ||||| | || | |||||||| ||||||| ||||||||||||||   || ||||||||||| || ||||||||||| ||    
T  983241 cgcctccttcttcactgataatcccgtcagtctgaatatatctaaaagtaaatccctaacaaagtcaggtctgtacttaaaggcgggaagctccttataa 983340  T
Q  154 tga 156  Q
    |||    
T  983341 tga 983343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 43857171 - 43857340
Alignment:
Q  63 cttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgaca 162  Q
    ||||||| ||||||| ||| | || |||||||||||||| ||| |||||| |||||  ||| | ||     ||||  ||| ||||||||||||||   ||    
T  43857171 cttcactaatactcctgcccgcttgaatatatcaaaaaggacaaccctaataaagtcatgtttata-----agtcaggaaactccttacaatgaactgca 43857265  T
Q  163 tgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataa 238  Q
    ||||||| ||||||||  || ||| |||||||||||||| || ||||||||||||||| ||| | |||||||||||    
T  43857266 tgctccc-aaaagtatctagacacaccttacgacaaacaagaaacacctcatcaatagaaaacagtggaatcataa 43857340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 3676933 - 3676999
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgt 121  Q
    ||||| ||||||| ||||| ||||||| || | |||||||||||||||||||| | |||||||||||    
T  3676933 gcctccttcttcattgatattcccgcccgtctgaatatatcaaaaagtacatctcaaacaaagttgt 3676999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 983022 - 983054
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  983022 attgtcagaacacgatttctcatgtttggccac 983054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4501331 - 4501363
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  4501331 attgtcagaacacgctttctcatgtttggccac 4501363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 21326872 - 21326840
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  21326872 attgtcagaacacgctttctcatgtttggccac 21326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 27521544 - 27521576
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||| ||||    
T  27521544 attgtcagaacacgttttctcatgtttgaccac 27521576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 32584674 - 32584706
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||| ||||    
T  32584674 attgtcagaacacgttttctcatgtttgaccac 32584706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 17344924 - 17345115
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||| |||| ||||||||||| |  |||| |||    
T  17344924 cacaggcgcctccttcttcactgatactcctgcccgtctgaatatatcaaaaagtacatccctaacaaagtcgtgtctgtacttaaagccaggaagttcc 17345023  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||    
T  17345024 ttacaatgaacgacatgctccccaaaagtatccaggcacgccttacgacaaacagggcacacctcatcaataggaaatagtggattcataag 17345115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 20142555 - 20142370
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||  ||| ||||||||||| |  ||||||||||||||    
T  20142555 cgcctccttcttcactgatattcccgcccgtctgaatatatcaaaaagtacatccctaacaaagtcatgtctgtacttaaagcctggaagctccttacaa 20142456  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||    
T  20142455 tgaacgacatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcattaggaaatagtggaatcataag 20142370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 4412880 - 4412694
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||  ||| || |||||||| ||  ||||||||||||||    
T  4412880 gcctccttcttcactgatattcccgcccgtttgaatatatcaaaaagtacatccctaacaaagtcatgtctgcacttaaagccggaaagctccttacaat 4412781  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||| |||||||||||||||||||| ||| ||||||||||||| |||| | |||||||||||||||| ||||| ||||||||||||||    
T  4412780 gaacgacatgctccccaaaagtatccagacacgccttacgaccaacaaggcacacctcatcaataggaaatagtggaatcataagac 4412694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 41867722 - 41867536
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||| ||||||| || | |||||||||||||| ||||||||||||||||   || ||||||||||| || |||||||||||||||    
T  41867722 gcctccttcttcactgatattcccgcccgtatgaatatatcaaaaagaacatccctaacaaagtcacgtctgtacttaaagccgggaagctccttacaat 41867623  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  41867622 gaatggcatgctccccaaaagtatccagacacgacttacgacaaacagagcacacctcatcaataggaaatagtggaatcataagac 41867536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 44686712 - 44686896
Alignment:
Q  56 cctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatg 155  Q
    |||| ||||||||||||||||||||| || | |||||||||||||||||||  |||||||| |  ||  ||||||||||| || ||||||||||||||||    
T  44686712 cctccttcttcactgatactcccgcccgtctgaatatatcaaaaagtacatatctaacaaaatgatgcatgtacttaaagccgggaagctccttacaatg 44686811  T
Q  156 aatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||||||| |||||||| ||| |||  |||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  44686812 aatgacatgctccc-aaaagtatccagacacatcttacgacaaacaggacacacctcatcaataggacatagtggaatcataagac 44686896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 9685229 - 9685045
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||| ||||| ||||| || | |||||||| ||||||||||||||||||||||  ||| ||||||||||| || |||||||||||||||    
T  9685229 gcctccttcttcactaatacttccgcccgtctgaatatatcgaaaagtacatccctaacaaagtcatgtctgtacttaaagccgggaagctccttacaat 9685130  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||| |||  ||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||| ||||| ||||||| ||||    
T  9685129 gaacgacgcgctccccaaaagtatccagacacgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaag 9685045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 28225326 - 28225478
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||||||||||||||||||||  ||  ||||||||||| ||  || |||||||||||||| | ||||||||||||||||||  || ||||    
T  28225326 aatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccggaaaactccttacaatgaacggcatgctccccaaaagtatctagacacg 28225425  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataaga 240  Q
     ||||||||||||| | |||||||||||||| | |||||||||||||||||||    
T  28225426 tcttacgacaaacatggcacacctcatcaatggaaaataatggaatcataaga 28225478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 5532719 - 5532884
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||||||||||  || | ||||||| |||||  ||||| |||||||| || ||| ||||||||||| |  |||||||||||||||    
T  5532719 gcctccttcttcactgatactcccgctcgtctgaatatattaaaaatgacatctctaacaaatttatgtttgtacttaaagccatgaagctccttacaat 5532818  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatag 220  Q
    |||   ||||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||    
T  5532819 gaactgcatgctccccaaaagtattcaggcacgtcttacaacaaacagggcacaccttttcaatag 5532884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 33612343 - 33612171
Alignment:
Q  67 actgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgct 166  Q
    ||||||||||||||  |  | |||||||||||||| |||||||| |||||||  ||| |||||||||| ||  ||||||||||||||||| |   |||||    
T  33612343 actgatactcccgctcgcctgaatatatcaaaaagaacatccctgacaaagtcatgtatgtacttaaaatctggaagctccttacaatgagttgtatgct 33612244  T
Q  167 ccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||||||| ||| ||| | |||||||||||| |||||||||||||||||  ||||| || |||||||||    
T  33612243 ccccaaaagtatccagacacactttacgacaaacatgacacacctcatcaatatgaaatagtgaaatcataag 33612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 18744762 - 18744648
Alignment:
Q  61 ttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatga 160  Q
    ||||| ||||||||||| ||| || | |||||||||||||||| |||||||||||||| |||| ||||||||||| |  |||| ||||||||||||| ||    
T  18744762 ttctttactgatactcctgcccgtctgaatatatcaaaaagtatatccctaacaaagtcgtgtatgtacttaaaggcaggaagttccttacaatgaacga 18744663  T
Q  161 catgctccccaaaag 175  Q
    |||||||||||||||    
T  18744662 catgctccccaaaag 18744648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 19161567 - 19161454
Alignment:
Q  127 tacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaata 226  Q
    |||||| || || |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||  || |||||||  |||| |||||    
T  19161567 tacttatagccgggaagctccttacaatgaacgacatgctccccaaaagtatccaggcgcgccttacgacaaacagagca-acctcattgataggaaata 19161469  T
Q  227 atggaatcataagac 241  Q
     || |||||||||||    
T  19161468 gtgcaatcataagac 19161454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 3826020 - 3826143
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgt----gtgtacttaaagtcgagaagctcctta 150  Q
    ||||||||||| ||||| ||| ||||  ||||||||||||||||||  ||||| |||||||||   |||     ||||||||||||||  ||||||||||    
T  3826020 gcctctttcttaactgacacttccgctcgtttaaatatatcaaaaatgacatctctaacaaaggcatgtataaatgtacttaaagtcggaaagctcctta 3826119  T
Q  151 caatgaatgacatgctccccaaaa 174  Q
    |||| || ||||| ||| ||||||    
T  3826120 caataaacgacatactctccaaaa 3826143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 27502647 - 27502715
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaa 116  Q
    |||| ||||||| ||||||| ||||||||||||    || |||||||||||||||||||| ||||||||    
T  27502647 cacaggcgcctccttcttcagtgatactcccgctcacttgaatatatcaaaaagtacatctctaacaaa 27502715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 44686493 - 44686526
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccaca 51  Q
    |||||||||||||| |||||||||||||||||||    
T  44686493 attgtcagaacacgctttctcatgtttggccaca 44686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2888589 - 2888621
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||| ||||    
T  2888589 attgtcagaacacgttttctcatgtttgtccac 2888621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 4413100 - 4413068
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  4413100 attgtcagaacacgctttctcatgtttggccac 4413068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 5679601 - 5679633
Alignment:
Q  86 taaatatatcaaaaagtacatccctaacaaagt 118  Q
    |||||||||||||||| ||||||||||||||||    
T  5679601 taaatatatcaaaaagaacatccctaacaaagt 5679633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 32115975 - 32116168
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  ||| |||||||||||| | ||||||||    
T  32115975 cacatgcgcctctttcttcactgatactcccgcccgtcaaaatatatcaaaaagtacatccctaacaaagtcatgtatgtacttaaagttgggaagctcc 32116074  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    | |||||||  |||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||||| | ||||||||||||    
T  32116075 tcacaatgagcgacatgctccccaaaagtatccaggcacaccttacgacaaacagggcacacatcatcaataggaaatagttgaatcataagac 32116168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 45484 - 45299
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||| ||||||| ||||||| ||   |||||||||||||||||||||||||||||||  ||| ||||||||||  ||||||||||||||||     
T  45484 cgcctccttcttaactgatattcccgcccgtcagaatatatcaaaaagtacatccctaacaaagtcatgtatgtacttaaacccgagaagctccttacac 45385  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
     ||| ||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  45384 cgaacgacatgctccccaaaagtatcaaggcacaccttacgacaaacagggcacacctcatcaataggaaatattggaatcataag 45299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 4206410 - 4206226
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaag-tcgagaagctccttacaa 153  Q
    ||||| ||||||||||||| |||| |  || | |||||||||||||||||||||||||||||||  ||| ||||||||||| ||| ||| |||||||||     
T  4206410 gcctccttcttcactgatattcccacacgtctgaatatatcaaaaagtacatccctaacaaagtcatgtatgtacttaaagctcg-gaaactccttacag 4206312  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||| | |||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||| ||||    
T  4206311 tgaacggcatgctccccaaaagtatccaggcacgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaag 4206226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 34304782 - 34304976
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaa-agtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctc 146  Q
    |||| ||| ||| ||||||||||||||||| |||||  | ||||||| |||| |||||||||||||||||||  ||  ||||||||||| ||||||||||    
T  34304782 cacatgcgtctccttcttcactgatactcctgcctgcctgaatatataaaaaaagtacatccctaacaaagtcatgcatgtacttaaagccgagaagctc 34304881  T
Q  147 cttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||| ||||  ||||||||||||||||||| ||| || | ||||||||||  ||| || ||||||||||||  ||||||||||||||||||||    
T  34304882 cttacagtgaacaacatgctccccaaaagtatccagacatgtcttacgacaagtagggcaaacctcatcaatatgaaataatggaatcataagac 34304976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 217
Target Start/End: Complemental strand, 357538 - 357369
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||||| ||||| ||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||   ||  ||||||| ||  |   || ||||    
T  357538 cacaagggcctccttcttcactgatactcccgcccgcctgaatatatcaaaaagtacatccctaacaaaggcatgcatgtactttaaaccagaaatctcc 357439  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaa 217  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||    
T  357438 ttacaatgaacgacatgctccccaaaagtatccagacacgccttacgtcaaaaaggacacacctcatcaa 357369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 29337851 - 29337716
Alignment:
Q  104 catccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacagg 203  Q
    |||||||||||||||| |||||||||||||||    |||||| |||||||||||  |||||||||||| |||||| |||||| ||||||||| ||||| |    
T  29337851 catccctaacaaagttatgtgtgtacttaaagctaggaagctacttacaatgaactacatgctccccacaagtatccaggcatgccttacgagaaacatg 29337752  T
Q  204 acacacctcatcaatagtaaataatggaatcataag 239  Q
     ||| |||||| ||||| |||||  |||||||||||    
T  29337751 gcacgcctcattaatagaaaatagaggaatcataag 29337716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 14538720 - 14538634
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaa 174  Q
    |||||||||||||| ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  14538720 aatatatcaaaaaggacatctctaacaaagttatgtatgtacttaaagtcaagaagctccttacaacgaatgacatgctcccaaaaa 14538634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 32120310 - 32120406
Alignment:
Q  143 gctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||| |||||| |  ||||||||||||||||| ||| ||| |||||||||||| ||| ||||||| |||||||| ||||| ||||||||||||    
T  32120310 gctccttataatgaaaggaatgctccccaaaagtatccagacacaccttacgacaaatagggcacacctgatcaataggaaatattggaatcataag 32120406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 12401617 - 12401805
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||| |||||| |||| |  | |||||||||||||||||||  ||||||||||  ||| |||| | ||||  | ||| ||||    
T  12401617 cacaggcgcctccttcttcactaatactctcgcccgcctgaatatatcaaaaagtacatttctaacaaagtcatgtttgtattcaaagctgggaaactcc 12401716  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||||   |     ||||||||||||||||||||    |||||||||| |||||||| |||| ||||||||||| ||||| || |||||||||||    
T  12401717 ttacgcgg-----catgctccccaaaagtattctaatacgccttacggcaaacagggcacaactcatcaatagaaaatagtgtaatcataagac 12401805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 28008820 - 28008730
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtat 178  Q
    |||||||||| ||| |||||||||| |||||  ||| |||||||||||||   |||||||||||||| |||  ||||||||||||||||||    
T  28008820 aatatatcaagaaggacatccctaataaagtcatgtttgtacttaaagtcagaaagctccttacaataaattgcatgctccccaaaagtat 28008730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 20693382 - 20693312
Alignment:
Q  87 aaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaa 157  Q
    ||||||||||||||  ||| |||||| |||||  ||| ||||||||||||| |||||||||||||||||||    
T  20693382 aaatatatcaaaaatgacaaccctaataaagtcatgtttgtacttaaagtcaagaagctccttacaatgaa 20693312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 7200354 - 7200206
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||| ||||||||||||||||| ||  |||| || |||   | ||  | |||||||||||  |||||| | | ||||||||  || ||||    
T  7200354 aatatatcaaaaaggacatccctaacaaagttatgcatgtatttgaagcaaataaagttcttacaatgaactacatgccctcgaaaagtatctagacacg 7200255  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataatggaatcat 236  Q
    ||||| | |||||||| |||| ||||||||||  || ||||||||||||    
T  7200254 ccttatggcaaacagggcacatctcatcaataaaaagtaatggaatcat 7200206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 8375076 - 8374929
Alignment:
Q  90 tatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgcc 189  Q
    |||||||||||| |||||| ||||||| |||||  | || || |||  | ||||||||||||||||||    |||||||||||| |||| ||| |||| |    
T  8375076 tatatcaaaaagaacatccataacaaatttgtgcctttatttgaagcagggaagctccttacaatgaactttatgctccccaaaggtatccagacacgtc 8374977  T
Q  190 ttacgacaaacaggacacacctcatcaatagtaaataatggaatcataa 238  Q
    |||   |||||||   ||||||||||||||| || ||||||||||||||    
T  8374976 ttattgcaaacagtg-acacctcatcaatagaaagtaatggaatcataa 8374929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 357751 - 357719
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  357751 attgtcagaacacgctttctcatgtttggccac 357719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 53785995 - 53786185
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| |||| || ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||    
T  53785995 cacatgcgcttccttcttcactgatactcctgcccgtctgaatatatcaaaaagtacatccctaacaaagtcgtgtctgtacttaaagccg-gaagctcc 53786093  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||| ||||| | ||||||||||    
T  53786094 ttacaatgaacgacatgctccccaaaagtatccaggcacgccttacgacaaacaaggtacacctcatcaataggaaatagttgaatcataag 53786185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 29862090 - 29862274
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||  ||  ||||||||||    ||||||||||||||||    
T  29862090 gcctctttcttcactaatactcccgcctgcctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaaactcagaagctccttacaat 29862189  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||| ||||||||||||||||||||  ||||||||||||||| ||| ||   ||||||||||||||| ||||||||||||||||||    
T  29862190 gaacgacatgctccccaaaagtatctaggcacgccttacgataaatagagaacacctcatcaataggaaataatggaatcataag 29862274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 52411723 - 52411536
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    ||||| || ||| ||||||||||||||||  | | | || ||||||| |||||| |||||||||| |||||  |||   |||||||||  ||||||||||    
T  52411723 cacaaacgtctccttcttcactgatactcttgtccgcttgaatatattaaaaaggacatccctaataaagtcatgtcaatacttaaagctgagaagctcc 52411624  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatca 235  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  52411623 ttacaatgaacgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacaccttatcaataggaaacaatggaatca 52411536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 52741326 - 52741187
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||||||||||| ||||||| || | ||||||||||||| |||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  52741326 cgcctccttcttcactgatattcccgcccgtctgaatatatcaaaaattacatccctaacaaagtcatgtctgtacttaaagtcgggaagctccttacaa 52741227  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttac 193  Q
    |||| ||||| |||||||||||||| || | |||||||||    
T  52741226 tgaacgacatactccccaaaagtatccaagaacgccttac 52741187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 49018262 - 49018408
Alignment:
Q  61 ttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatga 160  Q
    |||||||| |||||||| ||| || | |||||||||||||| ||||||||||||||||  ||| |||||||||| ||  |||| | ||||||||||| ||    
T  49018262 ttcttcaccgatactcctgcccgtctgaatatatcaaaaagcacatccctaacaaagtcatgtatgtacttaaaatcaggaagtttcttacaatgaacga 49018361  T
Q  161 catgctccccaaaagtattcaggcacgccttacgacaaacaggacac 207  Q
    ||||||||| ||||||||  ||||||| |||||||||||||||||||    
T  49018362 catgctcccaaaaagtatataggcacgtcttacgacaaacaggacac 49018408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 35236414 - 35236594
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||| ||||||||||| |  ||||||||| ||||||||||||| |||||||||  ||  ||| |||||||||  |||| |||    
T  35236414 cacatgcgcctccttcttcactcatactcccgcccgcctaaatatataaaaaagtacatccttaacaaagtcatgcatgtgcttaaagtcaggaagatcc 35236513  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataat 228  Q
    ||||||| ||  ||||||| || |||||||| ||| |||   |||||||| || |  |||||||||||||||| |||||||    
T  35236514 ttacaataaacaacatgcttcctaaaagtatccagacacatgttacgacagacggagcacacctcatcaataggaaataat 35236594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 39583044 - 39582980
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagt 118  Q
    |||||| ||||||||||||||||||||||  |||| ||||| ||||| |||||||||||||||||    
T  39583044 cgcctccttcttcactgatactcccgccttattaagtatataaaaaattacatccctaacaaagt 39582980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 45676567 - 45676428
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||| |||||| |||||||||  ||  |||| || |||||| ||||||  |||||||||||  ||| ||| ||||| ||||  || ||||    
T  45676567 aatatatcaaaaaggacatccataacaaagtcatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacacg 45676468  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataat 228  Q
    || |||||||||| |||||||| | |||||||| |||||||    
T  45676467 ccatacgacaaac-ggacacactttatcaatagaaaataat 45676428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 43123468 - 43123615
Alignment:
Q  86 taaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggca 185  Q
    ||||||||| |||||| ||||||||||||||||  ||  |||| || || | |  ||||| ||||||||||||  | |||| ||||   ||||  || ||    
T  43123468 taaatatataaaaaaggacatccctaacaaagtcatgcatgtatttgaaattggaaagcttcttacaatgaattgcttgcttcccagtggtatctagaca 43123567  T
Q  186 cgccttacgacaaacaggacacacctcatcaatagtaaataatggaat 233  Q
     ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  43123568 tgccttacgacaaacaagacacgcctcatcaatagaaaataatggaat 43123615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 7501862 - 7501789
Alignment:
Q  145 tccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaata 219  Q
    |||||||||||||   |||||||||||||||||| ||| ||||| ||||||||||||  ||||||||||||||||    
T  7501862 tccttacaatgaactgcatgctccccaaaagtatccagacacgcattacgacaaaca-aacacacctcatcaata 7501789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 44199093 - 44199183
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtat 178  Q
    ||||||| ||||| ||||||  |||||||||  ||| ||||||||||||||  || ||||||||||| ||| |  ||||||||||||||||    
T  44199093 aatatataaaaaaatacatctgtaacaaagtcatgtctgtacttaaagtcggaaaactccttacaataaataatgtgctccccaaaagtat 44199183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 37992695 - 37992772
Alignment:
Q  140 gaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaat 218  Q
    ||||||| ||||||||||  |||||| |||||||||||  |||  ||| ||||||||||||||  ||||||||||||||    
T  37992695 gaagctctttacaatgaaccacatgc-ccccaaaagtacccagatacgtcttacgacaaacagagcacacctcatcaat 37992772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 38146346 - 38146488
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaa-gttgtgtgtgtacttaaagtcgagaagctc 146  Q
    ||||||| |||| ||||||||| ||||||| |||    |||||||||||||||| |||| | ||| ||| ||  ||||  ||||||||||||   |||||    
T  38146346 cacaagcacctcattcttcacttatactcctgcccacctaaatatatcaaaaaggacattcttaaaaaaagtcatgtgcatacttaaagtcggatagctc 38146445  T
Q  147 cttacaatgaatgacatgctccccaaaagtattcaggcacgcc 189  Q
    ||||| |||||  |||| ||||| |||||||| || |||||||    
T  38146446 cttacgatgaacaacatactccctaaaagtatccaagcacgcc 38146488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 7901138 - 7901243
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||| ||| |||||||  |||||| ||||| |  |||||||||||||||||||||  ||||||| ||  ||  ||||||||||| ||| ||||||     
T  7901138 cacaggcgtctccttcttcatcgatacttccgcccgcctaaatatatcaaaaagtacat--ctaacaaggtcatgcttgtacttaaagccgaaaagctcg 7901235  T
Q  148 ttacaatg 155  Q
    ||||||||    
T  7901236 ttacaatg 7901243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 26772831 - 26772863
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||| ||||||||||||    
T  26772831 attgtcagaacacgttttctgatgtttggccac 26772863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 39583263 - 39583231
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  39583263 attgtcagaacacgctttctcatgtttggccac 39583231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 26212403 - 26212214
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||||||| |||| ||  | | ||||||||||||||||||||||||||||| |  ||| ||||||||||| |||||||||||    
T  26212403 cacaggcgcctccttcttcactgatattcccaccc-tctgaatatatcaaaaagtacatccctaacaaaatcatgtatgtacttaaagccgagaagctcc 26212305  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataa 238  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  26212304 ttacaataaacgacatgctccccaaaagtatccaggcacgccttacgacaaacaggacacacttcatcaataggaaataatgaaatcataa 26212214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 433583 - 433771
Alignment:
Q  53 gcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttaca 152  Q
    |||||||||||||||| |||| ||||||| || | ||||||||||| |||||||||||||||||||  ||  |||||||||||| | |||||||||||||    
T  433583 gcgcctctttcttcaccgatattcccgcccgtctgaatatatcaaatagtacatccctaacaaagtcatgcctgtacttaaagttgggaagctccttaca 433682  T
Q  153 atgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||||||| ||| | ||||||||||||||    
T  433683 atgaacgacatgctccccaaaagtatccagacacgccttacgacaaacagtgcacacctcatcaataggaaaaagtggaatcataagac 433771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 15291824 - 15291655
Alignment:
Q  68 ctgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctc 167  Q
    ||||||||||||||  | | ||||||||||||||||| |||||||||||||  ||| ||||||||||| || ||||||||||||||||||  ||||||||    
T  15291824 ctgatactcccgcccatctgaatatatcaaaaagtacgtccctaacaaagtcatgtttgtacttaaagccgggaagctccttacaatgaacaacatgctc 15291725  T
Q  168 cccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcata 237  Q
    ||||||||||| ||| |||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  15291724 cccaaaagtatccagacacgccttacgataaacatgacacacctcatcaatagaaaatagtggaatcata 15291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 38446452 - 38446642
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||||||||||||||| |  | |||||||||||||||||||||||||||||||  ||  |||||||||||| | ||||||||    
T  38446452 cacatgcgcctccttcttcactgatactcccgcccgcctgaatatatcaaaaagtacatccctaacaaagtcatgcatgtacttaaagttgggaagctcc 38446551  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataa 238  Q
    |||||||||| | || |||||| ||||||||  ||  |||||||||||||||| || |||||||||||||| | |||||||||||||||||    
T  38446552 ttacaatgaacggcacgctccctaaaagtatctagatacgccttacgacaaaccgggcacacctcatcaatggaaaataatggaatcataa 38446642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 27336989 - 27337172
Alignment:
Q  58 tctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaa 157  Q
    |||||||||||||||||||| ||  |  | ||||||||||||||||  |||||||||||||   || ||||||||||| || |||| |||||||||||||    
T  27336989 tctttcttcactgatactcctgctcgcctgaatatatcaaaaagtatgtccctaacaaagtcaagtatgtacttaaagccgggaagttccttacaatgaa 27337088  T
Q  158 tgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
     | ||||||||| |||||||| ||| || ||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||    
T  27337089 cggcatgctccctaaaagtatccagacatgccttacgacaaacagggcacacctcatcaataggaaaaagtggaatcataagac 27337172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 6534384 - 6534196
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||| ||||||||||| |||||||||||||    |||||||||||||||||| |||| |||||||||| | ||||||||||||  ||  ||||| |    
T  6534384 cacatgcgtctctttcttcattgatactcccgcccacctaaatatatcaaaaagtatatccttaacaaagttatatgtgtacttaaaaccggaaagcttc 6534285  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcat 236  Q
    |||||||||||  ||||||||  |||||||| ||| || ||||||||||||||| |||||||||||||||||  ||||||| |||||||    
T  6534284 ttacaatgaatagcatgctccataaaagtatccagacatgccttacgacaaacatgacacacctcatcaataagaaataatagaatcat 6534196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 35310734 - 35310904
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| |||||||||||||||| |||  |    |||||||||||||| ||||||||||||||||  ||| |||||||||||  |  |||||||    
T  35310734 cacaggcgcctccttcttcactgatactctcgctcgcccgaatatatcaaaaaggacatccctaacaaagtcatgtctgtacttaaagctggaaagctcc 35310833  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaat 218  Q
    ||||||||||  |||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  35310834 ttacaatgaacaacatactccccaaaagtattcagacacgccttacaacaaacagggcacacctcatcaat 35310904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 3113979 - 3113796
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| |||||||||||||||||||||    | |||||||||||||| ||||||||||||||||  ||| ||||||||||| |   ||||||||||||||    
T  3113979 gcctccttcttcactgatactcccgcccagctgaatatatcaaaaaggacatccctaacaaagtcatgtttgtacttaaagccagaaagctccttacaat 3113880  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||   |||||| ||||||||||| |||| |||||||  |||||| ||| |||||||||||||||| | ||| ||||||||||||    
T  3113879 gaactgcatgct-cccaaaagtatccaggtacgccttgtgacaaatagggcacacctcatcaataggagatagtggaatcataag 3113796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 13166731 - 13166542
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| |||| || ||||||||||||||| ||||| |  | ||||||||||||||||||||||| |||||||  ||  |||| ||||||     |||||||    
T  13166731 cacaggcgcttccttcttcactgatacttccgcccgcctgaatatatcaaaaagtacatcccttacaaagtcatgcttgtatttaaagctacaaagctcc 13166632  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcata 237  Q
    |||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||  ||||||||||||||   ||||| ||||||||||    
T  13166631 ttacaatgaacgacatgctccccgaaagtatccagacacgccttacaacaaacagagcacacctcatcaatcagaaatagtggaatcata 13166542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 25663002 - 25662945
Alignment:
Q  184 cacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||    
T  25663002 cacgccttacgacaaacaaggcacacctcatcaataggaaatagtggaatcataagac 25662945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 32269620 - 32269421
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtc-gagaagctc 146  Q
    |||| ||||||  |||||||||| |||||||||  || | ||||||| ||||| |||||||||||||||||  ||  ||||||||||  | | ||| ||     
T  32269620 cacatgcgccttcttcttcactgctactcccgctcgtctgaatatataaaaaattacatccctaacaaagtcatgattgtacttaaaagctgggaaactt 32269521  T
Q  147 cttacaatgaatgacatgctccccaa--aagtatt---caggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||||||||||| |||||  |||||||  ||||||    ||| ||   ||||||||| ||| |||| ||||||||||||| ||||| ||||||||||||||    
T  32269520 cttacaatgaacgacatattccccaataaagtatatcccagacatatcttacgacacacaagacatacctcatcaatagaaaatagtggaatcataagac 32269421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15292060 - 15292028
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||||||||    
T  15292060 attgtcagaacacgttttctcatgtttggccac 15292028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 26009919 - 26009867
Alignment:
Q  165 ctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaa 217  Q
    ||||||||| |||||| |||| |||| ||| |||||||| |||||||||||||    
T  26009919 ctccccaaaggtattctggcatgcctcacggcaaacagggcacacctcatcaa 26009867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 37873672 - 37873640
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  37873672 attgtcagaacacgctttctcatgtttggccac 37873640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 43129607 - 43129639
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||| ||||    
T  43129607 attgtcagaacacgttttctcatgtttgaccac 43129639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 24125320 - 24125504
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| | ||||||| || |||| ||| || |||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||| ||    
T  24125320 cgcctcctacttcactaatgctcctgcccgtctaaatatatcaaaaagtacatccctaacaaagtcatgtttgtacttaaagtcgggaagctccttaaaa 24125419  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataa 238  Q
    |||| | |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  24125420 tgaacggcatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataggaaatagtggaatcataa 24125504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 39434953 - 39435146
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||||||||||||||  |  | |||||||||||||||||||||||||||||||  ||  ||||||||||| || |||| ||     
T  39434953 cacaggcgcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccgggaagttct 39435052  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||| | |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||    
T  39435053 ttacaatgaacggcatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataggaaaaagtggaatcataagac 39435146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 37517375 - 37517566
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| |||||| |||||| | |||||||| | |||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  37517375 cacaggcgcctccttcttcgctgatatttccgcctgtctgaatatatcaaaaagtacatccctaacaaagtcatgtctgtacttaaagtcgggaagctcc 37517474  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||||| | ||||||||||| ||| || ||  |||| ||||||| ||||||| |||||||||||||||| ||||| ||||||||||||    
T  37517475 ttacaatgaacggcatgctccccagaagaatccacacacgtcttacgataaacagggcacacctcatcaataggaaatagtggaatcataag 37517566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 500526 - 500704
Alignment:
Q  61 ttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatga 160  Q
    |||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||| |  ||  |||||||||||||| || ||||||||||||||| ||    
T  500526 ttcttcactgatactctcgcatgtctgaatatatcaaaaagtacatccctaacaaaatcatgcatgtacttaaagtcgggatgctccttacaatgaacga 500625  T
Q  161 catgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||||||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||||| ||||    
T  500626 catgctccccaaaagtatctaggcatgccttacaacaaacaggtcacacctcatcaataggaaatattggaatcgtaag 500704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 42921908 - 42921758
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||| ||||||||||| ||||  ||| ||||||||||| | |||| || |||||||||||  |||||||| |||||| ||||||   ||     
T  42921908 aatatatcaaaaagaacatccctaacgaagtcatgtatgtacttaaagccaagaaacttcttacaatgaactacatgctctccaaaaatattca---aca 42921812  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
     ||||||||||||  | | |||||||||||||  ||||||||||||||||||||    
T  42921811 tcttacgacaaacgaggcgcacctcatcaataagaaataatggaatcataagac 42921758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 10189842 - 10190022
Alignment:
Q  61 ttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatga 160  Q
    |||||||||||||||| | || | ||  ||||||||||||  |||| | |||||||||  ||| ||||||||||| || ||||||||||||||||||       
T  10189842 ttcttcactgatactctcacccgcttggatatatcaaaaatgacattcttaacaaagtcatgtttgtacttaaagccgtgaagctccttacaatgaactg 10189941  T
Q  161 catgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    ||||||||  |||||||| ||||||| ||||||| ||||| ||   ||  |||||||||  ||||||| ||||||||||||    
T  10189942 catgctccttaaaagtatccaggcacaccttacggcaaacggggtgcatgtcatcaatatgaaataatagaatcataagac 10190022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 25021534 - 25021437
Alignment:
Q  139 agaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcat 236  Q
    |||||||||||||||||||  ||||||| |||||||||||  ||||||||||||||| ||| | | |||||||||||||||  ||||| |||||||||    
T  25021534 agaagctccttacaatgaactacatgcttcccaaaagtatcaaggcacgccttacgataaatatggcacacctcatcaatatgaaatagtggaatcat 25021437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 27715669 - 27715796
Alignment:
Q  109 ctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacaca 208  Q
    |||||||||| |||  |||| || ||||||||||||||||||||||||||  ||||||||||| |  |||  ||||| ||||||||| |||||  |||||    
T  27715669 ctaacaaagtcgtgcatgtatttgaagtcgagaagctccttacaatgaattgcatgctccccagatatatcgaggcatgccttacgataaacaaaacaca 27715768  T
Q  209 cctcatcaatagtaaataatggaatcat 236  Q
    ||||| |||||  |||||||| ||||||    
T  27715769 cctcaacaataaaaaataatgaaatcat 27715796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 43134349 - 43134448
Alignment:
Q  110 taacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacac 209  Q
    |||||||||  ||| |||||||||| | | ||| ||||||| |||||||   ||| ||||||||||| ||||| |||||||||||||||||| |||||||    
T  43134349 taacaaagtcatgtttgtacttaaaattgggaaactccttataatgaatttaatgttccccaaaagttttcagacacgccttacgacaaacaagacacac 43134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 500300 - 500332
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||||||||    
T  500300 attgtcagaacacgttttctcatgtttggccac 500332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 139681 - 139782
Alignment:
Q  140 gaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||||||||||| | ||||  |||||||||||||| |||| ||  || || ||| | |||| ||| |||||||| ||||||| |||||||| |||||| ||    
T  139681 gaagctccttatagtgaactacatgctccccaaaggtatccaaacatgctttagggcaaataggtcacacctcgtcaataggaaataatgaaatcatgag 139780  T
Q  240 ac 241  Q
    ||    
T  139781 ac 139782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8882400 - 8882432
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  8882400 attgtcagaacacgctttctcatgtttggccac 8882432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38815367 - 38815399
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  38815367 attgtcagaacacgctttctcatgtttggccac 38815399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 39434740 - 39434772
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  39434740 attgtcagaacacgctttctcatgtttggccac 39434772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 16957822 - 16958013
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| | | ||||||||||||| ||| || | ||||||||||||||||||||||||| |||||  ||| |||||||||||||  ||||||||    
T  16957822 cacaggcgcctcctacctcactgatactcctgcccgtctgaatatatcaaaaagtacatccctaaaaaagtcatgtatgtacttaaagtcaggaagctcc 16957921  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||||| || |||||||||||||||||  ||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||    
T  16957922 ttacaatgaacgatatgctccccaaaagtatctaggcacgccttacgacaaacaaggcacacctcatcaatagaaaatagtggaatcataag 16958013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 53170793 - 53170975
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||||||||||||||||| ||| ||| || | |||||  ||||||||||||||||| ||||||  ||| |||||||| ||  | ||||||||||||||    
T  53170793 cgcctctttcttcactgatattcctgcccgtctgaatat--caaaaagtacatcccta-caaagtcatgtctgtacttagagcggggaagctccttacaa 53170889  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||    
T  53170890 tgaacgacatgctccccaaaagtattcaggcacgccttacgacaaacagggcacacctcatcaatagaaaatagtggaatcgtaag 53170975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 3330243 - 3330389
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||||||||||  |  | |||||||||||||||||||||||||||||||  ||  ||||||||||| || |||||||||||||||    
T  3330243 gcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccgggaagctccttacaat 3330342  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaaca 201  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  3330343 gaatggcatgctccccaaaagtatacagacacgccttacgacaaaca 3330389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 34952457 - 34952610
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| |||||||||||||||| |||| |  | |||||||||||||  ||||||||||||||||  ||| |||||||||||| ||||||||||    
T  34952457 cacatgcgcctccttcttcactgatactctcgcccgccttaatatatcaaaaatgacatccctaacaaagtcatgtatgtacttaaagtagagaagctcc 34952556  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaaca 201  Q
    ||||| | || | |||||||||||||||||||||| |||| |||||||||||||    
T  34952557 ttacattaaacggcatgctccccaaaagtattcagacacgtcttacgacaaaca 34952610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 56461894 - 56461744
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||||||||||||||||||||      | ||||||||  |  ||||||||||||| |||| |||||||||||||||| ||| |||||||     
T  56461894 aatatatcaaaaagtacatccctaacaaagtcacacctatacttaaaaccaggaagctccttacagtgaacgacatgctccccaaaa-tatccaggcaca 56461796  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||||| ||||||| |||||||||||||||| ||||| ||||||||||||    
T  56461795 ccttacgaaaaacagggcacacctcatcaatagaaaatagtggaatcataag 56461744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 12918154 - 12917995
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaag-------ctccttacaatgaatgacatgctccccaaaagtattc 180  Q
    |||||||||||||||||||||||||||||||  |   |||||||||||||| ||||       ||||||||||||||||||||| | | ||||||||| |    
T  12918154 aatatatcaaaaagtacatccctaacaaagtcatacatgtacttaaagtcgggaagtaggatgctccttacaatgaatgacatgtttctcaaaagtatcc 12918055  T
Q  181 aggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataaga 240  Q
    || ||| |||||||||||||| | |||| ||||||||||| ||||| || ||||||||||    
T  12918054 agacacaccttacgacaaacatggcacatctcatcaatagaaaatagtgaaatcataaga 12917995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 50000746 - 50000616
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||| ||||||||| ||  |  | ||||||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  50000746 cacaggcgcctccttcttcattgatactcctgctcgcctgaatatatcaaaaagtacatccttaacaaagtcatgtctgtatttaaagtcgggaagctcc 50000647  T
Q  148 ttacaatgaatgacatgctccccaaaagtat 178  Q
    |||||||||| | |||||| |||||||||||    
T  50000646 ttacaatgaacggcatgcttcccaaaagtat 50000616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 25504586 - 25504689
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaa-agtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    ||||| |||||||||||| ||| |||| |||| |||||||||||| |||||||| ||||||||||  ||| |||||||||||||  ||||||||||||||    
T  25504586 gcctcgttcttcactgatgctctcgcccgtttgaatatatcaaaaaagtacatctctaacaaagtcatgtttgtacttaaagtcaggaagctccttacaa 25504685  T
Q  154 tgaa 157  Q
    ||||    
T  25504686 tgaa 25504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 48506861 - 48506731
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||| || ||||||| || | || | | ||||||||||| ||||||| |||||||||  ||| |||||||||||||  ||||||||    
T  48506861 cacaggcgcctccttctttaccgatactctcgtccgtctgagtatatcaaaaaatacatccgtaacaaagtcatgtatgtacttaaagtcaggaagctcc 48506762  T
Q  148 ttacaatgaatgacatgctccccaaaagtat 178  Q
    | ||||||||  || ||||||||||||||||    
T  48506761 taacaatgaaccacgtgctccccaaaagtat 48506731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 26521774 - 26521843
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaag 117  Q
    |||| ||||||| ||||||| |||||||| || | || ||||||||||||||||||||||||||||||||    
T  26521774 cacatgcgcctcattcttcaatgatactctcgtccgtctaaatatatcaaaaagtacatccctaacaaag 26521843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 25706851 - 25706986
Alignment:
Q  105 atccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacagga 204  Q
    ||||||||||||||  ||  ||||||||||||||| ||||||||||| |||||  | | ||||||||||||||| || |||| |||||||||||| |||     
T  25706851 atccctaacaaagtcatgcatgtacttaaagtcgataagctccttacgatgaacaata-gctccccaaaagtatccatgcacaccttacgacaaataggg 25706949  T
Q  205 cacacctcatcaatagtaaataatggaatcataagac 241  Q
     ||||   |||| |||  |||||| ||||||||||||    
T  25706950 tacactctatcagtaggtaataatagaatcataagac 25706986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 132682 - 132796
Alignment:
Q  58 tctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaa 157  Q
    ||||| |||||| ||||||| ||| |  | |||||||||||| ||||||||||||||||||  ||  | ||||||||  ||  |||||||||||||||||    
T  132682 tcttttttcactaatactcctgcccgcctgaatatatcaaaa-gtacatccctaacaaagtcatgattatacttaaaaccggaaagctccttacaatgaa 132780  T
Q  158 tgacatgctccccaaa 173  Q
     ||||||||| |||||    
T  132781 cgacatgctctccaaa 132796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 53619659 - 53619691
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||||||||||||||||||||||    
T  53619659 attgtcagaacacgttttctcatgtttggccac 53619691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23255777 - 23255809
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  23255777 attgtcagaacacgctttctcatgtttggccac 23255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 34644852 - 34645045
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| |||| || |||||||||||||||||||||    | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| |||||||     
T  34644852 cacacgcgcttccttcttcactgatactcccgccctcctgaatatatcaaaaagtacatccctaataaagtcatgcctgtacttaaagtcgggaagctct 34644951  T
Q  148 ttacaatgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataagac 241  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||||| |||||||||| ||| |||||||| ||| ||||| ||||||||||||||    
T  34644952 ttacaatgaacgacatgctcgccaaaagtatccagacacgccttatgacaaacagggcactcctcatcactagaaaatagtggaatcataagac 34645045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 22347170 - 22347340
Alignment:
Q  55 gcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaat 154  Q
    ||||| ||||||||||||| |||||||  | | || || |||||||||||||||||||||||||| ||| | ||||||||| ||  ||||||||||||||    
T  22347170 gcctccttcttcactgatattcccgcccatctgaaaatgtcaaaaagtacatccctaacaaagttatgtctatacttaaagccggtaagctccttacaat 22347269  T
Q  155 gaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaat 225  Q
    ||| ||||||||||||  |||||| |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  22347270 gaacgacatgctccccttaagtatccaggcatgccttacgacaaacagggcacacctcatcaatagaaaat 22347340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 28040942 - 28040757
Alignment:
Q  54 cgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaa 153  Q
    |||||| ||||||||||||| || |||  || |||||||||||||| ||||||||||||||||||  ||| ||||||||||  || ||| ||| ||||||    
T  28040942 cgcctccttcttcactgatattctcgcacgtctaaatatatcaaaaggtacatccctaacaaagtcatgtatgtacttaaatccgggaaactcattacaa 28040843  T
Q  154 tgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||| ||||||||||| |||||||||||| ||| | ||||| |||||||| |||||| ||||| ||| ||||||||||||||||||    
T  28040842 tgaacgacatgctccctaaaagtattcagtcacacattacggcaaacagggcacaccacatcattaggaaataatggaatcataag 28040757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 29169615 - 29169488
Alignment:
Q  48 cacaagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcc 147  Q
    |||| ||||||| ||||||||||||||||  ||| || | ||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| |||    
T  29169615 cacaggcgcctccttcttcactgatactcatgcccgtctgaatatatcaaaaaatacatcccttacaaagtcgtgtctgtacttaaagccgagaagttcc 29169516  T
Q  148 ttacaatgaatgacatgctccccaaaag 175  Q
    |||||||||| |||||||||||||||||    
T  29169515 ttacaatgaacgacatgctccccaaaag 29169488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 7794732 - 7794545
Alignment:
Q  53 gcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttaca 152  Q
    |||||||  |||||| ||||||||||||| |  | ||| |||||||||| ||||||||| ||||    ||| ||||||||||||||| |||||  |||||    
T  7794732 gcgcctccctcttcaatgatactcccgcccgcctgaatttatcaaaaaggacatccctagcaaaaccatgtttgtacttaaagtcgaaaagctttttaca 7794633  T
Q  153 atgaatgacatgctccccaaaa-gtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||  ||||||||||||||| |||| ||| |||||||||||||||||| |   ||||| |||||||  ||||||||||||||||||    
T  7794632 atgaactacatgctccccaaaaagtatccagacacgccttacgacaaacaaggtgcaccttatcaatatgaaataatggaatcataag 7794545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 19035775 - 19035872
Alignment:
Q  90 tatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgct-ccccaaaagtattcaggcac 186  Q
    ||||||||||||||||||||||||||| |  ||| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||    
T  19035775 tatatcaaaaagtacatccctaacaaattcatgtctgtacttaaagtcgggaagctccttacaatgaacgacatgctcccccaaaagtatccaggcac 19035872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 38731874 - 38732060
Alignment:
Q  56 cctctttcttcactgatactcccgcctgtttaaatatatcaaaaagta---catccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttaca 152  Q
    |||| |||||||||||||||||| ||||  ||||||||| |||||  |   |||||||||||||||  | | ||||||||||| | ||||||||||||||    
T  38731874 cctccttcttcactgatactcccacctgcctaaatatataaaaaaaaatgacatccctaacaaagtcatatttgtacttaaagccaagaagctccttaca 38731973  T
Q  153 atgaatgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    |||||    ||||| | ||||||||| ||||||| |||||||| |||||  ||| || ||||||| || ||||| ||||||||||||    
T  38731974 atgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataag 38732060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 37932036 - 37931921
Alignment:
Q  51 aagcgcctctttcttcactgatactcccgcctgtttaaatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctcctta 150  Q
    ||||| ||| ||||||||| ||||||||||| |  |||||| ||||||||| | |||||||||||||||     | ||||||||||||||||||||||||    
T  37932036 aagcgtctccttcttcacttatactcccgcccgcctaaatacatcaaaaaggatatccctaacaaagttcaca-tatacttaaagtcgagaagctcctta 37931938  T
Q  151 caatgaatgacatgctc 167  Q
    ||||||| |||||||||    
T  37931937 caatgaacgacatgctc 37931921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 37200634 - 37200732
Alignment:
Q  141 aagctccttacaatgaa-tgacatgctccccaaaagtattcaggcacgccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||||||||||||||||| ||| ||| ||||||||||||| || ||||| ||||| ||||  ||| |||||||||||||||| ||||| |||||| |||||    
T  37200634 aagctccttacaatgaaatga-atgatccccaaaagtatccaagcacgtcttacaacaagtagggcacacctcatcaataggaaatagtggaattataag 37200732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 35387089 - 35386966
Alignment:
Q  96 aaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacgccttacga 195  Q
    |||||| ||||||||| | ||||  | | ||||||||||||   |||||||||||||| |||   ||||||||  | || ||| || |||| ||||||||    
T  35387089 aaaaaggacatccctagctaagtcatctatgtacttaaagttaggaagctccttacaacgaactgcatgctcctaacaaatatccaagcacaccttacga 35386990  T
Q  196 caaacaggacacacctcatcaata 219  Q
    |||||||||||  |||||||||||    
T  35386989 caaacaggacatgcctcatcaata 35386966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19035520 - 19035552
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  19035520 attgtcagaacacgctttctcatgtttggccac 19035552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 29169827 - 29169795
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    ||||||||||||||||||||| |||||||||||    
T  29169827 attgtcagaacacgttttctcgtgtttggccac 29169795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 31575146 - 31575086
Alignment:
Q  98 aaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaat 158  Q
    |||| ||||||||||||||||||||| |||| || || ||||||||||  || ||||||||    
T  31575146 aaagaacatccctaacaaagttgtgtttgtagttgaaatcgagaagctattttcaatgaat 31575086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 20047 - 20198
Alignment:
Q  88 aatatatcaaaaagtacatccctaacaaagttgtgtgtgtacttaaagtcgagaagctccttacaatgaatgacatgctccccaaaagtattcaggcacg 187  Q
    |||||||||||||| |||| |||||||||||   || |||||||| ||    ||||||||||||||||||    ||||||||||| ||||| ||||||||    
T  20047 aatatatcaaaaaggacattcctaacaaagtcaagtatgtacttatagctaggaagctccttacaatgaactgtatgctccccaatagtatccaggcacg 20146  T
Q  188 ccttacgacaaacaggacacacctcatcaatagtaaataatggaatcataag 239  Q
    ||||| |||||| ||| |||||||||||||||| |||||||| |||||||||    
T  20147 ccttatgacaaaaagggcacacctcatcaataggaaataatgtaatcataag 20198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 6407 - 6439
Alignment:
Q  18 attgtcagaacacgttttctcatgtttggccac 50  Q
    |||||||||||||| ||||||||||||||||||    
T  6407 attgtcagaacacgctttctcatgtttggccac 6439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 16206 - 16238
Alignment:
Q  17 tattgtcagaacacgttttctcatgtttggcca 49  Q
    ||||||||||||| |||||||||||||||||||    
T  16206 tattgtcagaacatgttttctcatgtttggcca 16238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University