View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19062_high_5 (Length: 497)
Name: NF19062_high_5
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_5 |
 | |
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| [»] scaffold0580 (4 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 15177518 - 15177989
Alignment:
| Q |
16 |
atatcttcttcttgaagcttgccttttgaagtgactcccctcactgttgttcatactaatactgaagaaaccacccgaattcctaataatagaggactca |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15177518 |
atatcttcttcttgaaacttgccttttgaagtgactcccctcactgttgttcatactaatactgaagaaaccacccgaattcctaataatagaggactca |
15177617 |
T |
|
| Q |
116 |
ttgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgttgttcatcctactcatgtcactatcatcaacgttggtcg |
215 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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|
| T |
15177618 |
ttacgtgaaatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgttgttcatcctattgatgtcgctatcatcaacgttggtcg |
15177717 |
T |
|
| Q |
216 |
tcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
15177718 |
tcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaaaaagtgtagacacttcaaagacgtggaagatcattagtaaga |
15177817 |
T |
|
| Q |
316 |
tattaaaaattaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttca |
415 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15177818 |
tattaaaaattaggaggtcgagcgggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgag-aaaagaagcttca |
15177916 |
T |
|
| Q |
416 |
gaa-aagtgggacagttgcaaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctatg |
488 |
Q |
| |
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||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
15177917 |
gaacaagtggaacagttgcaaacatttgattccgcat-aatgatgaccaaatatttgatgatattttacctatg |
15177989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 78 - 447
Target Start/End: Complemental strand, 15469839 - 15469469
Alignment:
| Q |
78 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15469839 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgaaatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
15469740 |
T |
|
| Q |
178 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaag |
277 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
15469739 |
gttcatcctattgatgtcactatcatcaacgttgctcgtcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacgag |
15469640 |
T |
|
| Q |
278 |
tgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaaga |
377 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15469639 |
tgtagttacttcaaagacgtggaaggtcattggtaagatattaaaacttaggaggtcgagcgggttaaaaataacaacaaaaaagtgtgtgatggaaaga |
15469540 |
T |
|
| Q |
378 |
gaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgcaaacatttgattcc |
447 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||| |
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|
| T |
15469539 |
gaacaagataccttgaaggatgagaataagaagcttcagaaccagtggaacagtttcaaacatttgattcc |
15469469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 226 - 488
Target Start/End: Original strand, 15165409 - 15165673
Alignment:
| Q |
226 |
tttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaat |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
15165409 |
tttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacgagagtagatacttcaaagacatggaaggtcattggtaagatattaaaaat |
15165508 |
T |
|
| Q |
326 |
taggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgg |
424 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
15165509 |
taggaggtcgagcgggtttaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaataagaagcttcagaacaagtgg |
15165608 |
T |
|
| Q |
425 |
gacagttgc-aaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctatg |
488 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||| |
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|
| T |
15165609 |
aacagttgcaaaacatttgattccgcgtaaatgatgacaaaaaatttgatgatattttagctatg |
15165673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 15176332 - 15176419
Alignment:
| Q |
78 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
15176332 |
tgaagaaaccacccgaattcctaataatagaatactcattgcgtgaaatatttcaagatggatttcaaacaaaaaaggggattctagt |
15176419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 15176417 - 15176471
Alignment:
| Q |
428 |
agttgcaaacatttgattccgcataaatgatgaccaaatatttgatgatatttta |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15176417 |
agttgcaaacatttgattccgcataaatgatgaccaaatatttgatgatatttta |
15176471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Complemental strand, 23256265 - 23255793
Alignment:
| Q |
16 |
atatcttcttcttgaagcttgccttttgaagtgactcccctcactgttgttcatactaatactgaagaaaccacccgaattcctaataatagaggactca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| || |
|
|
| T |
23256265 |
atatcttcctcttgaagcttgccttttgaagtgactcccctcactgttgttcatcctaatactaaagaaaccacc-gaattcctaataatagaggaccca |
23256167 |
T |
|
| Q |
116 |
ttgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgttgttcatcctactcatgtcactatcatcaacgttggtcg |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23256166 |
ttgcgtgaaatatttcaagatggatttcaaacaagaaatgagattctagtgagaggattgttgttcatcctattgatgtcactatcatcaacgttggtcg |
23256067 |
T |
|
| Q |
216 |
tcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaaga |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23256066 |
tcatattgcctttaatgaagatttatagcttctctcatgctcatacatagtgaaacaacgagtgtagatacttcaaagacgtggaaggtcattggtaaga |
23255967 |
T |
|
| Q |
316 |
tattaaaaattaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttca |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
23255966 |
tattaaaagttaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatgggaagagaacaagataccttgaaggaagagaataagaagcttcg |
23255867 |
T |
|
| Q |
416 |
gaa-aagtgggacagttgc-aaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctat |
487 |
Q |
| |
|
||| | |||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23255866 |
gaacatgtggaacagttgcaaaacatttgattccgcgtaaacgatgaccaaatatttgatgatattttaactat |
23255793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 78 - 488
Target Start/End: Complemental strand, 8121 - 7709
Alignment:
| Q |
78 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8121 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgacatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
8022 |
T |
|
| Q |
178 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaag |
277 |
Q |
| |
|
|||||||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8021 |
gttcatcctattgatgtcagtatcctcaacattggtcgtcatattgcctttaatgaagatttatagcttctttcatgctcatacatagtcaaacaacaag |
7922 |
T |
|
| Q |
278 |
tgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaaga |
377 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7921 |
tgtagatacttcacagacgtggaagatcattggtaagatattaaaaattaggaggttgagcgagttaaaaataacaacaaaaaagtatatgatggaaaga |
7822 |
T |
|
| Q |
378 |
gaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc-aaacatttgattccgcataaatgatgaccaaatatttgatga |
475 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
7821 |
gaacaagataccttgaaggatgagaataagaagcttcagaacaagtggaacagttgcaaaacatttgattccgcgtaaatgatgactaaaaatttgatga |
7722 |
T |
|
| Q |
476 |
tattttacctatg |
488 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
7721 |
tattttagctatg |
7709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 78 - 457
Target Start/End: Complemental strand, 382 - 1
Alignment:
| Q |
78 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
382 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgacatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
283 |
T |
|
| Q |
178 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctcatacatagtcaaacaacaag |
277 |
Q |
| |
|
|||||||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
282 |
gttcatcctattgatgtcagtatcctcaacattggtcgtcatattgcctttaatgaagatttatagcttctttcatgctcatacatagtcaaacaacaag |
183 |
T |
|
| Q |
278 |
tgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcgagcaggttaaaaataacaacaaaaaagtatgtgatggaaaga |
377 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
182 |
tgtagatacttcatagacgtggaagatcattggtaagatattaaaaattaggaggttgagcgagttaaaaataacaacaaaaaagtatatgatggaaaga |
83 |
T |
|
| Q |
378 |
gaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc-aaacatttgattccgcataaatga |
457 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
82 |
gaacaagataccttgaaggatgagaataagaagcttcagaacaagtggaacagttgcaaaacatttgattccgcgtaaatga |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 424 - 384
Alignment:
| Q |
17 |
tatcttcttcttgaagcttgccttttgaagtgactcccctc |
57 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
424 |
tatcttcctcttgaagcttgcctttagaattgactcccctc |
384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 8163 - 8123
Alignment:
| Q |
17 |
tatcttcttcttgaagcttgccttttgaagtgactcccctc |
57 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
8163 |
tatcttcctcttgaagcttgcctttagaattgactcccctc |
8123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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