View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_high_6 (Length: 493)
Name: NF19062_high_6
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_6 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 38624696 - 38624248
Alignment:
| Q |
6 |
acaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatctaaaatgaaaataatagacttgactttgctgaagaacacatttaca |
105 |
Q |
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| T |
38624696 |
acaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatctaaaatgaaaataatagacttgactttgctgaagaacacatttaca |
38624597 |
T |
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| Q |
106 |
gagaatgacatgatcactatttttagaacggtatcaatggtaaaagacaaggaatccaaatgttaggaaggataaccgcatccagcaagtttattctaaa |
205 |
Q |
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| T |
38624596 |
gagaatgacatgttcactatttttagaacggtatcaatggtaaaagacaaggaatccagatgttaggaaggataaccgtatccagcaagtttattctaaa |
38624497 |
T |
|
| Q |
206 |
gttcaaactcgttttatatggcaaataagctttacatcatctagttcacagcattttaattatcctcgtttataaaattctaaatggaagataagcttaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38624496 |
gttcaaactcgttttatatggcaaataagctttacattatctagttcacagcattttaattatcctcgtttataaaattctaaatggaagataagcttaa |
38624397 |
T |
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| Q |
306 |
cattatgtcagaatgtttaacttaaaacagtcaatgatctcagacaaaatgctttgtttcaaaatagttaagaactgggatgcagcagacaaaaataaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38624396 |
cattatgtcagaatgtttaacttaaaacagtcaatgatctcagacaaaatgctttgtttcaaaatagttaagaactgggatgcagcagacaaaaatgaaa |
38624297 |
T |
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| Q |
406 |
agtagagatgaaatggataactttggaaatttaggaattggaaagaaaa |
454 |
Q |
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| T |
38624296 |
agtagagatgaaatggataactttggaaatttaggaattggaaagaaaa |
38624248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 38649751 - 38649638
Alignment:
| Q |
66 |
gaaaataatagacttgactttgctgaagaacacatttacagagaatgacatgatcactattttt-agaacggtatcaatggtaaaagacaaggaatccaa |
164 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38649751 |
gaaagtaatagacttgactttgctgaagaacacatttacagagagtgacacattcactattttttagaacagtatcaatggtaaaagacaaggaatccaa |
38649652 |
T |
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| Q |
165 |
atgttaggaaggat |
178 |
Q |
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| T |
38649651 |
atgttcggaaggat |
38649638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 38649573 - 38649480
Alignment:
| Q |
353 |
aatgctttgtttcaaaatagttaagaactgggatgcagcagacaaaaataaaaagtagagatgaaatggataactttggaaatttaggaattggaaa |
449 |
Q |
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| T |
38649573 |
aatgctttgtttcaaaatagttaagaactgggatgcagcagacaaaaatgaaaagtaga---gaaagggataacttcggaaattttggaattggaaa |
38649480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 38649792 - 38649753
Alignment:
| Q |
6 |
acaaagcagcataaatataaatgacaattgataggaattg |
45 |
Q |
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| T |
38649792 |
acaaagcagcataaatataaatgacaattgacaagaattg |
38649753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 477
Target Start/End: Complemental strand, 2175 - 2147
Alignment:
| Q |
449 |
agaaaaggcttaaatatgtatttgatcct |
477 |
Q |
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| T |
2175 |
agaaaaggcttaaatatgtatttgatcct |
2147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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