View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_high_8 (Length: 457)
Name: NF19062_high_8
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 35676094 - 35676522
Alignment:
| Q |
18 |
gtaggctgtagccaccacttagtttacaagaaaacttggacaaagaaaacccattaagctgtgtgtttagggatgccatttttgaaggttgaatttgagc |
117 |
Q |
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| T |
35676094 |
gtaggctgtagccaccacttagtttacaagaaaacttggacaaagaaaacccattaagctgtgtgtttagggatgccatttttgaaggttgaatttgagc |
35676193 |
T |
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| Q |
118 |
aaccaaaaagtacagatttttcaattctattgcttaatgctgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaagagacaacttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35676194 |
aaccaaaaagtacagatttttcaattctattgcttaatgctgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaagagacaacttt |
35676293 |
T |
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| Q |
218 |
aaatttgcaaagatagagatgaagatggtgaatattannnnnnnnnnnnnnnnatcattaatnnnnnnnnnnnntttttactttcaatttagtctcaatg |
317 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||| |
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| T |
35676294 |
gaatttgcaaagatggagatgaagatggtgaatattatttttttggtttttttatcattaataaaaaataattttttttactttcaatttagtccctatg |
35676393 |
T |
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| Q |
318 |
attgacacatcatcattaataaaaatatattgccatttctttttgtacgacggatctctaaagttatcaagttgggctaaccaatgatggatcaggaagc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
35676394 |
attgacacatcatcattaataaaaatatattgccatttccttttgtaggagggatctctaaagttatcaagttgggctaaccaatgatagatcatgaagc |
35676493 |
T |
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| Q |
418 |
tcatttaacctctataaatcttagagtat |
446 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
35676494 |
tcatataacctctataaatcttagagtat |
35676522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 43539533 - 43539696
Alignment:
| Q |
79 |
tgtgtttagggatgccatttttgaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcttaatgctgtagtcttatatgagtaaaa |
178 |
Q |
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| T |
43539533 |
tgtgtttagggatgccatttt-gaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcctaatgttgtagtcttatatgagtaaaa |
43539631 |
T |
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| Q |
179 |
aggtaattctaactgaaaatttcaaaaagag--acaactttaaatttgcaaagatagagatgaag |
241 |
Q |
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| T |
43539632 |
aggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagagatgaag |
43539696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 29979902 - 29979822
Alignment:
| Q |
158 |
tgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaa--gagacaactttaaatttgcaaagatagaga |
236 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
29979902 |
tgtagtcttatatgagtaaaaaggtaattctaattgaaaatttcaaaaagagagacaactttgaaattgcaaagatagaga |
29979822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 8484153 - 8484189
Alignment:
| Q |
292 |
tttttactttcaatttagtctcaatgattgacacatc |
328 |
Q |
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|||||||||||||||||||| | |||||||||||||| |
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| T |
8484153 |
tttttactttcaatttagtccctatgattgacacatc |
8484189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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