View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_11 (Length: 394)
Name: NF19062_low_11
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 38885956 - 38886323
Alignment:
| Q |
14 |
aaaagttattaagtaccnnnnnnngtaaggtagaatttaattcctttccacctctcaacaagaagtggcatgagggtagcaaccctttagaagagacaag |
113 |
Q |
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| T |
38885956 |
aaaagttattaagtaccaaaaaaagtaaggtagaatttaattcctttccacctctcaacaagaagtggcatgagggtagcaaccctttagaagagacaag |
38886055 |
T |
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| Q |
114 |
ttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctatctctctctttgtctccctcttttggtttctgtt |
213 |
Q |
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| T |
38886056 |
ttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctatctctctctttgtctccctcttttggtttctgtt |
38886155 |
T |
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| Q |
214 |
tcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccctgaaaataatcatagtactatccttatggagag |
313 |
Q |
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| T |
38886156 |
tcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccctgaaaataatcatagtactatccttatggagag |
38886255 |
T |
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| Q |
314 |
acgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
381 |
Q |
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| T |
38886256 |
acgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
38886323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 30504521 - 30504578
Alignment:
| Q |
324 |
agcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
381 |
Q |
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| T |
30504521 |
agcttaattagaacttgtctcacatgtggtcatcatatcaaaggccaagatcaggttc |
30504578 |
T |
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